Showing 221 open source projects for "https"

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  • 1
    OmssaGUI

    OmssaGUI

    GUI front-end for OMSSA

    GUI front-end for the OMSSA proteomics search engine. For more information, you can have a look at the README.md file in the source code tree: https://sourceforge.net/p/lp-csic-uab/omssagui/code/ci/default/tree/README.md - Gallardo, Ó., Ovelleiro, D., Gay, M., Carrascal, M., & Abian, J. (2014). A collection of open source applications for mass spectrometry data mining. PROTEOMICS, 14(20), 2275–2279. https://doi.org/10.1002/pmic.201400124
    Downloads: 1 This Week
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  • 2
    SequestGUI

    SequestGUI

    GUI front-end to sequest.exe

    GUI front-end to sequest.exe proteomics search engine, developed in Perl. For more information, you can have a look at the README.md file in the source code tree: https://sourceforge.net/p/lp-csic-uab/sequestgui/code/ci/default/tree/README.md - Gallardo, Ó., Ovelleiro, D., Gay, M., Carrascal, M., & Abian, J. (2014). A collection of open source applications for mass spectrometry data mining. PROTEOMICS, 14(20), 2275–2279. https://doi.org/10.1002/pmic.201400124
    Downloads: 1 This Week
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  • 3
    get_iplayer

    get_iplayer

    A utility for downloading TV and radio programmes from BBC iPlayer

    ...get_iplayer has PVR-like capabilities - you can save lists of programme searches which are automatically recorded when they become available. Requires Perl 5.16+ with LWP, LWP::Protocol:https, Mojolicious, XML::LibXML, and CGI modules. Documentation: https://github.com/get-iplayer/get_iplayer/wiki Download: https://github.com/get-iplayer/get_iplayer/releases/latest Source code: https://github.com/get-iplayer/get_iplayer
    Downloads: 0 This Week
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  • 4

    idcheck

    apache cookie SSO mechanism.

    Cookie based web authentication and single sign on system for largish intranets under a single domain where many, untrusted, people run their own web services. The server uses a private cookie scoped only for the client browser and the idcheck webserver which is always protected with SSL. In addition to the common practise of using SSL for everything (which idcheck supports). The idcheck system can also be used to provide authentication to websites where you merely want to hide content...
    Downloads: 0 This Week
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  • 5
    Koha Live DVD

    Koha Live DVD

    Koha Live and Installer DVD based on Ubuntu Linux (64bit).

    ...Open a command Terminal and apply following commands; sudo su [password, koha123 ] ubiquity Ubiquity installer will open and proceed with installation. Live DVD is for learning purpose only. Visit official documentation for detailed installation steps of Koha. https://wiki.koha-community.org/wiki/Koha_on_ubuntu_-_packages
    Downloads: 13 This Week
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  • 6
    MetaErg

    MetaErg

    Metagenome Annotation Pipeline

    MetaErg is a stand-alone and fully automated metagenome and metaproteome annotation pipeline published at: https://www.frontiersin.org/articles/10.3389/fgene.2019.00999/full. If you are using this pipeline for your work, please cite: Dong X and Strous M (2019) An Integrated Pipeline for Annotation and Visualization of Metagenomic Contigs. Front. Genet. 10:999. doi: 10.3389/fgene.2019.00999 The instructions on configuring and running the MetaErg pipeline is available at GitHub repository: https://github.com/xiaoli-dong/metaerg
    Downloads: 0 This Week
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  • 7
    Alien Evolution

    Alien Evolution

    A websocket based realtime browser application using the Alien Cipher.

    ...Alien moves the logic outside of the webtree and provide cgi abilities via the apis that connect the endpoints together and allows Alien to deliver client code on a realtime basis according to user interactions. This approach allows Alien to perform realtime tasks that would be next to impossible to perform with HTTP transfers. Live dev at https://alienzone.host All built on Alien technology. Enjoy =D
    Downloads: 0 This Week
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  • 8
    LMAP_S

    LMAP_S

    Lightweight Multigene Alignment and Phylogeny eStimation

    Emanuel Maldonado and Agostinho Antunes (2019) LMAP_S: Lightweight Multigene Alignment and Phylogeny eStimation. BMC Bioinformatics, 20:739. doi: https://doi.org/10.1186/s12859-019-3292-5
    Downloads: 0 This Week
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  • 9
    This project has moved to https://github.com/jordan2175/doxygen-filter-perl This is a doxygen pre-filter for Perl source code.
    Downloads: 0 This Week
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  • 10

    RoomFinder

    View your company building(s) on Google Maps

    More details can be found at https://sites.google.com/site/parishnetworks/home/technology/roomfinder I wrote this for my company, where the campus is large enough that people sometimes had difficulties finding other people, conference rooms, etc. It is especially handy for Helpdesk, new hires, mail room personnel, etc who often need to find people and places that are new to them.
    Downloads: 0 This Week
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  • 11
    WeBWorK Online Homework Delivery System
    ...It gives students instant feedback and allows instructors to track their progress in real time. Problems are written in a flexible and easy to use language. Current builds of this project are at https://github.com/openwebwork
    Downloads: 0 This Week
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  • 12
    Meraculous-2D

    Meraculous-2D

    Eukaryotic Genome Assembler

    ...The assembly is driven by a perl pipeline which performs data fragmentation and load balancing, as well as submission and monitoring of multiple task arrays on a GE/SLURM-type cluster or a standalone multi-core server. Manuscripts in submission: https://arxiv.org/abs/1703.09852 https://arxiv.org/abs/1608
    Downloads: 0 This Week
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  • 13
    Sagacity

    Sagacity

    Security Assessment Data Management and Analysis Tool

    We have migrated development of Sagacity to GitHub at https://github.com/cyberperspectives/sagacity Sagacity is a vulnerability assessment and STIG compliance data management tool designed to make security testing more efficient, effective and complete. Security assessments, especially those done for DoD and Federal organizations, produce tremendous amounts of scan and compliance data that security engineers must sort through and deconflict, identify untested requirements, and somehow analyze to communicate risk to their employers. ...
    Downloads: 1 This Week
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  • 14
    As of 2018-06-28, this project has moved to https://github.com/AdamaJava. This copy of the code will remain but all new code updates and releases will be from the new site. Java code developed by the Australian ICGC team for operating on next-generation sequencing data. This code is currently being maintained and expanded by the QIMR Berghofer Genome Informatics team (http://www.qimrberghofer.edu.au/lab/genome-informatics/) More details and documentation can be found on the wiki: http://sourceforge.net/p/adamajava/wiki/Home/
    Downloads: 0 This Week
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  • 15
    owfs and owhttpd

    owfs and owhttpd

    Project moved to https://github.com/owfs/owfs/

    Please note that OWFS source code, and all Issue/Tickets/merge requests have now been moved to https://github.com/owfs/owfs/. Developer mailing lists will still be kept at Sourceforge. ---- OWFS -- 1-Wire file system. Use the Dallas 1-Wire and iButton chips with standard filesystem commands. Create temperature loggers. Monitor everything. OWHTTPD -- same system, only used as a light weight web server. OWFS is also ported to embedded routers, Mac OSX and Windows.
    Downloads: 21 This Week
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  • 16
    rePhase

    rePhase

    A loudspeaker phase linearization, EQ and filtering tool

    ...Project page: https://rephase.org Changelog: https://rephase.org/changelog.html Support: https://www.diyaudio.com/forums/multi-way/221434-rephase-loudspeaker-phase-linearization-eq-fir-filtering-tool.html
    Downloads: 0 This Week
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  • 17
    maff-viewer

    maff-viewer

    Viewer / Extractor for compressed HTML in the Mozilla Archive Format

    Viewer / Extractor for compressed HTML in the Mozilla Archive Format (*.maff file) Maff-viewer works fully offline and uses your prefered browser to display the extracted maff-file content. For details see https://sourceforge.net/projects/maff-viewer/files/Maff-Viewer_Doku.pdf/download
    Downloads: 1 This Week
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  • 18

    BisSNP

    Bisulfite-seq/NOMe-seq SNPs & cytosine methylation caller

    Now in Github: https://github.com/dnaase/Bis-tools/tree/master/Bis-SNP BisSNP is a package based on the Genome Analysis Toolkit (GATK) map-reduce framework for genotyping in bisulfite treated massively parallel sequencing (Bisulfite-seq, NOMe-seq and RRBS) on Illumina platform. It uses bayesian inference with either manually specified or automatically estimated methylation probabilities of different cytosine context(not only CpG, CHH, CHG in Bisulfite-seq, but also GCH et.al. in other bisulfite treated sequencing) to determine genotypes and methylation levels simultaneously. ...
    Downloads: 1 This Week
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  • 19

    Web-CAT

    Open-source automated grading of programming assignments

    ...This project also provides Eclipse plugins for electronic submission and feedback services directly from the Eclipse IDE. We now use github for source code control (https://github.com/web-cat), although all file releases are still provided here through SourceForge. The CVS repository here is for archival purposes only.
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    Downloads: 15 This Week
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  • 20

    LOCUST

    Custom Sequence Locus Typer

    ...Publication: Brinkac LM, Beck E, Inman J, Venepally P, Fouts DE, Sutton G. LOCUST: A Custom Sequence Locus Typer for Classifying Microbial Isolates. Bioinformatics (Oxford, England). 2017 Jan 27; https://www.ncbi.nlm.nih.gov/pubmed/28130240
    Downloads: 1 This Week
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  • 21
    Simple Movie Catalog will scan a given directory for movies, query imdb for info and generate a catalog in html which offers sorting and grouping of found movies by different criteria. Note: source code has been moved to github: https://github.com/damienlangg/SimpleMovieCatalog
    Downloads: 2 This Week
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  • 22
    NOTE: The projects is now being developed here: https://github.com/eugmes/fntsample A program for making font samples that show Unicode coverage of the font and are similar in appearance to Unicode charts. Samples can be saved as PDF or PostScript files.
    Downloads: 0 This Week
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  • 23
    LMAP

    LMAP

    Lightweight Multigene Analyses in PAML

    Maldonado E, Almeida D, Escalona T, Khan I, Vasconcelos V and Antunes A (2016) LMAP: Lightweight Multigene Analyses in PAML. BMC Bioinformatics, 17:354. doi: https://doi.org/10.1186/s12859-016-1204-5
    Downloads: 0 This Week
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  • 24
    ...The project is dedicated to provide a napiprojekt client for embedded devices; like home NAS servers on which python is not available or there are problems with it (lack of all needed libraries) If you wish to post some patches, refer to project's GitHub repository: https://github.com/dagon666/napi
    Downloads: 0 This Week
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  • 25
    NamelessROM

    NamelessROM

    Custom ROM for Android

    ...This availability will allow you, the end-user, to have direct input into exactly what features and functions are included on the firmware that YOU run. NamelessRom == endless possibilities. Unless you have an iPhone, then you're out of luck. Get more information and find support on our forums at https://nameless-rom.org
    Downloads: 21 This Week
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