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MetaErg is a stand-alone and fully automated metagenome and metaproteome annotation pipeline published at: https://www.frontiersin.org/articles/10.3389/fgene.2019.00999/full.
If you are using this pipeline for your work, please cite:
Dong X and Strous M (2019) An Integrated Pipeline for Annotation and Visualization of Metagenomic Contigs. Front. Genet. 10:999. doi: 10.3389/fgene.2019.00999
The instructions on configuring and running the MetaErg pipeline is available at GitHub repository: https://github.com/xiaoli-dong/metaerg
A multi-purpose extensible self-adaptive evolutionary algorithm
MicroGP (µGP, ugp) is a versatile optimizer able to outperform both human experts and conventional heuristics in finding the optimal solution of hard problems. It is an evolutionary algorithm since it mimics some principles of the Neo-Darwinian paradigm.
⚠️ A new version is available on https://github.com/squillero/microgp4
The Moses repository has moved:
https://github.com/moses-smt/mosesdecoder
Factored phrase-based, hierarchical and syntax decoder for statistical machine translation
This is a Java-based project for complex event extraction from text and co-reference resolution. Currently the code can read BioNLP shared task format (http://2011.bionlp-st.org/) and i2b2 Natural Language Processing for Clinical Data shared task format (https://www.i2b2.org/NLP/DataSets/Main.php). Event extraction includes finding events and the parameters for an event in a text.
The method is based on SVM but other ML algorithms can be adopted. The method details are explained in the following paper:
Ehsan Emadzadeh, Azadeh Nikfarjam, and Graciela Gonzalez. 2011. Double Layered Learning for Biological Event Extraction from Text. ...
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NOTE: I couldn't keep up this project to align with latest Unicode spec. Not sure I may be continuing. You can try Myanmar3 from Myanmar NLP or WinUniInnwa or https://sourceforge.net/projects/prahita/ or something better compliant font. ~Victor
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[This is UniBurma - UniMM project workshop area. This project currently have two productions, UniBurma and UniMM. For more descriptive info about this project, please visit http://unimm.org/. You can browse lastest source from SVN trunk.]