Search Results for "data structures c" - Page 3
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Showing 263 open source projects for "data structures c"
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Elevations moves data from Excel to Unix systems. It connects VBA with Cygwin SSH, CGI and HTTP POST to deliver to a QuantLib C++ server through pipes. Provides C++ classes to process CSV files and the strings to C++ types. File schema definitions.
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MOIRAI
Simple Scientific Workflow System for CAGE Analysis
Cap analysis of gene expression (CAGE) is a sequencing based technology to capture the 5’ ends of RNAs in a biological sample. After mapping, a CAGE peak on the genome indicates the position of an active transcriptional start site (TSS) and the number of reads correspond to its expression level. CAGE is prominently used in both the FANTOM and ENCODE project. MOIRAI is a compact yet flexible workflow system designed to carry out the main steps in data processing and analysis of CAGE data.... -
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AlienVault OSSIM
Open Source SIEM
OSSIM, AlienVault’s Open Source Security Information and Event Management (SIEM) product, provides event collection, normalization and correlation. For more advanced functionality, AlienVault Unified Security Management (USM) builds on OSSIM with these additional capabilities: * Log management * Advanced threat detection with a continuously updated library of pre-built correlation rules * Actionable threat intelligence updates from AlienVault Labs Security Research Team * Rich... -
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Manitou-Mail is a free Qt-based database-driven Mail User Agent with associated scripts. It stores mailboxes and mail messages as structured data, accessible (possibly concurrently) by SQL, in addition to providing common mailer features and some more.
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ZENBU is a data integration, data processing, and visualization web system based around three main web interfaces : an expression data enhanced genome browser interface, a secured user system for data upload and secured data sharing, and a data explorer interface to find and manipulate data across the many supported experimental data types and to find shared user configurations ZENBU is built as a web2.0 client/server application with javascript web clients and c++ server infrastructure.
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BioC
We describe a simple XML format to share text documents and annotation
A minimalist approach to share text documents and data annotations. Allows a large number of different annotations to be represented. Project files contain: - simple code to hold/read/write data and perform sample processing. - BioC-formatted corpora - BioC tools that work with BioC corpora BioC goals - simplicity - interoperability - broad use - reuse There should be little investment required to learn to use a format or a software module to process that format. We are... -
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XASTIR
Multiplatform Ham Radio APRS and Mapping Program
NOTE: Code commits were FROZEN on SourceForge in July of 2016, and the project no longer uses sourceforge. All new code is now at <http://github.com/Xastir/Xastir>. The version you can download here has been obsolete for over 10 years, and other than by deleting the project entirely we can't disable the "Download Now" button. Don't download from here. Go to github. Real-time tracking & messaging of stations via radio/internet APRS data streams, w/125 map formats supported.... -
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BamBam
Tools for genomic analysis
BamBam includes numerous tools for analyzing DNA next-generation sequencing data. Tools are provided for calling SNPs and indels, identifying large scale deletions, tabulating counts of mapped reads, methylation analysis, and more. Depends on SAMtools (http://samtools.sourceforge.net/) and BAMtools (https://github.com/pezmaster31/bamtools). Also uses BioPerl, which is included in the download tarball. -
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iCAS - An Illumina Clone Assembly System
An Illumina clone assembly system using SOAPdenovo and ABySS
Clone-by-clone sequencing, as a means of achieving high quality assemblies for large and complex genomes, continues to be of great relevance in the era of high throughput sequencing. However, assemblies obtained using current whole genome assemblers are often fragmented and sometimes have issues of genome completeness owing to different data characteristics introduced by multiplexed sequencing. With iCAS the data filtering process is based on a novel kmer frequency algorithm, resulting... -
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GMOD is a set of interoperable open source software components for visualizing, annotating, and managing biological data. See http://gmod.org for more.
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Celera Assembler (CA) is a whole-genome shotgun (WGS) assembler for the reconstruction of genomic DNA sequence from WGS sequencing data.
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Free Windows Network User Accounting
User Computer and IP Address Tracking
FWNUA (Free Windows Network User Accounting) runs silently in a Windows login script or GPO and collects data about user logins. FWNUA keeps track of the workstations logins so you don't have to! FWNUA now supports syslog and Splunk! Look for the fwnua - syslog version in the files list. Use Splunk or your own syslog server with data mining tools to create a robust user tracking system. Find our Spunk app on Splukbase: https://splunkbase.splunk.com/app/2773/ -
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SPA
SPA: a short peptide assembler for metagenomic data
The metagenomic paradigm offers the opportunity to study protein families, and therefore the metabolic and functional potential, of the constituent microbes in a community. A nucleotide assembly-based strategy does not fare much better since metagenomic assemblies are typically very fragmented and also leave a large fraction of reads unassembled. We present a method for reconstructing complete protein sequences directly from NGS metagenomic data. Our framework is based on a novel Short... -
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IRST LM Toolkit
A toolkit for language modeling.
...Please visit the new IRSTLM official website: http://hlt-mt.fbk.eu/technologies/irstlm IRSTLM: A tool for the estimation, representation, and computation of statistical language models. IRSTLM, the IRST Language Modeling Toolkit, features algorithms and data structures suitable to estimate, store, and access very large n-gram language models. Our software has been integrated into a popular open source Statistical Machine Translation decoder called Moses, and is compatible with language models created with other tools, such as the SRILM Tooolkit. -
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Wireless Universal Resource File
Handset Detection for Mobile Applications. Device Description Database
WURFL lets you detect thousands of types of mobile devices accessing your web service and take decisions based on what that device can or cannot do. With WURFL, you can optimize mobile web content, effectively deliver advertisements, or analyze mobile traffic. WURFL will read HTTP requests from mobile browsers and search the Device Description Repository (DDR) for the corresponding device properties (i.e. capabilities). WURFL will return the device capabilities to your application, which... -
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ASCII85-Tools
Convert between binary data and ASCII base-85 encoded text
This package consists of two command-line utilities and an accompanying Perl module that let you convert between binary data and ASCII base-85 encoded text as specified by Adobe in the PostScript Language Reference. There is also a C version available; please see the C/ directory in the Files section. -
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MPPerl::Convert::ASCII85::XS
Convert to/from ASCII base-85 encoded text
This module provides functions for conversion between binary data and ASCII base-85 encoded text as described by Adobe in the PostScript Language Reference. There is also a non‐standard mode that encodes a group of four consecutive ASCII SPACE characters as a single ‘y’ character, and omits the ‘~>’ EOD marker. -
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MPPerl::Convert::ASCII85
Convert to/from ASCII base-85 encoded text
This module provides functions for conversion between binary data and ASCII base-85 encoded text as described by Adobe in the PostScript Language Reference. There is also a non‐standard mode that encodes a group of four consecutive ASCII SPACE characters as a single ‘y’ character, and omits the ‘~>’ EOD marker. Please note that this module is written in pure Perl, and is as such very slow. A better alternative is to use the MPPerl::Convert::ASCII85::XS module, in which the most time-critical code has been written in C. ... -
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CIMS
Crosslinking induced mutation site analysis
This package includes the scripts to detect statistically reproducible crosslinking induced mutation sites (CIMS) and cross linking induced truncation sites (CITS) from HITS-CLIP data. References: Moore, M.*, Zhang, C.*, Gantman, E.C., Mele, A., Darnell, J.C., Darnell, R.B. 2014. Mapping Argonaute and conventional RNA-binding protein interactions with RNA at single-nucleotide resolution using HITS-CLIP and CIMS analysis. Nat Protocols, 9:263-293. Zhang,C.†, Darnell, R.B.† 2011. Mapping in vivo protein-RNA interactions at single-nucleotide resolution from HITS-CLIP data. ... -
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Libraries, documentation, examples & drivers for Eagle Technology South Africa's Data Acquisition products. These include ISA, PCI, PCI Express, USB, Serial & Ethernet. Supported languages will be C/C++, JAVA, Perl, Python.
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NG-CloudMS
Next Gen Cloud Management System (NG-CloudMS)
Next Gen Cloud Management System (NG-CloudMS) is a new web based end-to-end OCX management tool that is distributed by Opt/Net under GNU Public License (GPL). This prototype provides near real-time visibility of the networks and cloud infrastructures and interconnected computing and data storage resources. It therefore can assist the operators with visualisation and localization of the causes of potential incidents. -
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Perl implentation of rsync that can talk directly to a native rsync program or rsync daemon. The file system I/O is abstracted into a seperate module, which allows an rsync interface to be developed for data other than regular file systems.
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gdsii to gdt (graphics data text) format translator written in C/C++ that converts a binary gdsii file to a text format that is compact and easy to parse.
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The Mac TeX Toolbox provides an umbrella for TeX related development for Mac OS X: discussions, pointers to libraries and other support for open source TeX development on Mac OS X.
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QUASI is a toolkit to rapidly assess the quality of shRNA-Seq based data and call differential abundance using common statistical inference methods (DESeq, edgeR, baySeq).
