Search Results for "linux command" - Page 24

ZORRO is a probabilistic masking program that assigns confidence scores to each column in a multiple seqeunce alignment. These scores can then be used to account for alignment accuracy in phylogenetic inference pipelines.

A fast efficient way of dealing with large amounts of Blast or Repeatmasker data.

Advanced backup volume management system. Quick & low-cost way to make an environment more robust by backing up data in multiple places. Perl installer creates the system. The emergence of a DVTL (Distributed Virtual Tape Library). DIAP works in user spa

Replacement versions of ypwhich, ypcat and ypmatch that simulate the original NIS commands but obtain their data from LDAP entries defined with the RFC2307 schema.

This is a Java-based project for complex event extraction from text and co-reference resolution. Currently the code can read BioNLP shared task format (http://2011.bionlp-st.org/) and i2b2 Natural Language Processing for Clinical Data shared task format (https://www.i2b2.org/NLP/DataSets/Main.php). Event extraction includes finding events and the parameters for an event in a text. The method is based on SVM but other ML algorithms can be adopted. The method details are explained in the...

Tools for converting a Unix/Linux NIS environment to IPA (http://www.freeipa.org). Currently supports importing passwd, group, group members, hosts and netgroup NIS maps into IPA. IPA already contains support for importing automount maps.

SimBac is a software package for simulating bacterial genome evolution. It outputs samples of DNA sequences at each generation & allows testing of major evolutionary mechanisms, including mutation, recombination, genetic drift, and natural selection.

TPoX is an XML database benchmark based on a financial application scenario. It is used to evaluate the performance of XML database systems, focusing on XQuery, SQL/XML, XML storage, XML indexing, XML Schema support, XML updates, and other aspects.

Report creation tool. Presents results of an SQL query as a series of template-based entries.

Second generation of XMMS music player.

bib2html convert BibTeX descriptions of publications into a set of html pages with several different index pages types. Formatting is controllable through XSL.

GLEAN is an unsupervised learning system to integrate disparate sources of gene structure evidence (gene model predictions, EST/protein genomic sequence alignments, SAGE/peptide tags, etc) to produce a consensus gene prediction, without prior training.

RepMiner takes a graph theory approach to the classification and assembly of the repetitive fraction of genomic sequence data. Sequence lengths analyzed by RepMiner can range from full length transposable elements to low coverage sample sequence data.

Command line duplicate file finder for Linux machines, which finds the duplicate files by its content, name & directories by its name. Easy usage and efficient too.

A better way to rotate apache logs. It can rotate multiple times a day and it compresses logs AFTER httpd stops writing to them. Deletes old logs based on partition fullness.

giornaledioggi è uno script perl che permette di scaricare il quotidiano L'Informazione (edizioni di Modena e Reggio Emilia) e il Giornale di Reggio secondo i criteri specificati nel file di configurazione.

otl is a text processor for generating markup from plain text. Much of both the input and output formats can be customized. otl supports structures such as nested ordered lists, headers and footers, and tables.

DBox2::Client perl modules for controlling a dbox2

BUSTED! Do not use! Batch submit URLS to Google's URL removal tool. Sorry! Google changed the interface I was automating and I haven't had time to fix this script to match.

ZoneMinder is video and cctv surveillance and security application. It supports multiple video or IP cameras and a sophisticated motion detection system based around zones. Both live streams and historic events can be viewed via the web interface.

Abuild is no longer being maintained. In the years since its creation, better options have emerged. Even so.... Abuild is a scalable build system that applies Object-Oriented principles to the build problem. It is powerful and flexible and helps ensure build integrity while simplifying the user's view of the build. A thorough user's manual is included.

Tools for mass creation and maintenance of symlinks.

The Universal Unix-Installer are 2 perl scripts that makes it easy to create a redistributable install package for binary executables on an unix platform(except Mac OSX). 1 perl script is for gathering the .so files 1 perl script for installing

miRDeep-P,miRDP for short, is a computational tool for analyzing the microRNA (miRNA) transcriptome in plants.

The Simple Semantic Classifier classifies short chunks of natural language text into broad semantic classes that correspond to the OBO ontologies provided as input.