Search Results for "simple java code" - Page 2
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Showing 143 open source projects for "simple java code"
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CSBB-v2.1 [CSBB-v3.0 is now available]
Computational Suite For Bioinformaticians and Biologists
CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R, java and ruby in background for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the need to write programming code. CSBB is currently available on Linux, UNIX and Windows platforms. Currently CSBB provides 17 modules focused on analytical tasks like normalization, visualization, statistics, RNA-SEQ etc. -
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CSBB-v3.0
CSBB - Computational Suite for Bioinformaticians and Biologists
CSBB is a command line-based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R, java, python and ruby in background for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the need to write programming code. CSBB is currently available on Linux, UNIX. Currently CSBB provides 18 modules focused on analytical tasks like performing upper-quantile normalization, interactive visualization and next generation sequencing pipelines. ... -
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owfs and owhttpd
Project moved to https://github.com/owfs/owfs/
Please note that OWFS source code, and all Issue/Tickets/merge requests have now been moved to https://github.com/owfs/owfs/. Developer mailing lists will still be kept at Sourceforge. ---- OWFS -- 1-Wire file system. Use the Dallas 1-Wire and iButton chips with standard filesystem commands. Create temperature loggers. Monitor everything. OWHTTPD -- same system, only used as a light weight web server. -
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Simple Movie Catalog will scan a given directory for movies, query imdb for info and generate a catalog in html which offers sorting and grouping of found movies by different criteria. Note: source code has been moved to github: https://github.com/damienlangg/SimpleMovieCatalog
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MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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Web-CAT
Open-source automated grading of programming assignments
Web-CAT is a plug-in based web application for automatically grading programming assignments in many programming languages. This project also provides Eclipse plugins for electronic submission and feedback services directly from the Eclipse IDE. We now use github for source code control (https://github.com/web-cat), although all file releases are still provided here through SourceForge. The CVS repository here is for archival purposes only. -
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Perl Text Editor
Source code for perl simple text editor.
Simple text editor. Run: $perl 01text0.pl -
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MOIRAI
Simple Scientific Workflow System for CAGE Analysis
Cap analysis of gene expression (CAGE) is a sequencing based technology to capture the 5’ ends of RNAs in a biological sample. After mapping, a CAGE peak on the genome indicates the position of an active transcriptional start site (TSS) and the number of reads correspond to its expression level. CAGE is prominently used in both the FANTOM and ENCODE project. MOIRAI is a compact yet flexible workflow system designed to carry out the main steps in data processing and analysis of CAGE data.... -
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PreprocesssorWizard
WYSIWIG conditional compilation preprocessor for Java etc.
A WYSIWYG Conditional Compilation Preprocessor for Java, Perl, C, C++, Basic, PowerShell, C#, Javascript, and other programming languages. Many C and C++ developers rely heavily on the C preprocessor, and lament the lack of a preprocessor in Java, scripting languages, and other programming languages. The principal objection to a preprocessor is that it makes one's code difficult to read. -
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CSBB-v2.0
Computational Suite for Bioinformaticians and Biologists
CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R, java and ruby in background for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the need to write programming code. CSBB is currently available on Linux, UNIX and Windows platforms. Currently CSBB provides 16 modules focused on analytical tasks like normalization, visualization, statistics, RNA-SEQ etc. -
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epyunit
PyUnit and PyDev extensions for arbitrary Executables
The package 'epyunit' provides extensions for PyUnit and PyDev. * Extensions for PyUnit - Unittests for arbitrary executables. * Extensions for PyDev - Automation of search and load of pydevd.py The extensions are applicable from commandline and/or within Eclipse. Online manuals: - https://pythonhosted.org/epyunit/ PyPi repository: - https://pypi.python.org/pypi/epyunit Current application examples are: - bash-core - http://bash-core.sourceforge.net Nickname -... -
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ViralFusionSeq [VFS]
Accurately discover viral integration events and fusion transcripts
...https://hpc.nih.gov/apps/ViralFusionSeq/ ViralFusionSeq (VFS) is a versatile high-throughput sequencing (HTS) tool for discovering viral integration events and reconstruct fusion transcripts at single-base resolution. VFS combines soft-clipping information, read-pair analysis, and targeted de novo assembly to discover and annotate viral-human fusion events. A simple yet effective empirical statistical model is used to evaluate the quality of fusion breakpoints. Minimal user defined parameters are required. Source code with user manual and installation guide of VFS is available at sourceforge's "Files" section. Citation: http://www.ncbi.nlm.nih.gov/pubmed/ -
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BioC
We describe a simple XML format to share text documents and annotation
A minimalist approach to share text documents and data annotations. Allows a large number of different annotations to be represented. Project files contain: - simple code to hold/read/write data and perform sample processing. - BioC-formatted corpora - BioC tools that work with BioC corpora BioC goals - simplicity - interoperability - broad use - reuse There should be little investment required to learn to use a format or a software module to process that format. We are interested in reuse, and we focus on common NLP tasks that are broadly useful for textmining. -
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Cress Tool Suite
Cress is a comprehensive toolset for graphical service/workflow design
Cress (Communication Representation Employing Systematic Specification) allows graphical description of a wide variety of services such as in data communications/telecommunications, but Cress is not limited to this. The approach allows services to be described graphically as (work)flows of activities. Cress diagrams are automatically translated into formal languages for rigorous analysis and verification, and are also automatically translated into implementation languages for deployment... -
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PLP
Powerfull pre-processor
Powerful Verilog Preprocessor. PLP stands for Perl Pre-processor. Perl is used as "control language" that is embedded in the Verilog code (or any other code) to generate code on the fly. It is used commonly as a Verilog pre-processor but can be used with any target/output language (C, C++, Java, VHDL, plain text etc) -
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Clue is an experimental C compiler that generates code for high-level dynamic languages such as Lua, Javascript, Perl5 and Common Lisp, as well as non-dynamic languages like C and Java. It supports the complete ANSI standard, including pointer arithmetic
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DVCS-Ripper
Rip web accessible (distributed) version control systems: SVN/GIT/HG
DVCS Ripper is a security and forensics toolkit that reconstructs source code repositories accidentally exposed on web servers. It understands multiple version-control systems—Git, Mercurial, Bazaar, and Subversion—and crawls their metadata directories to rebuild full history where possible. The utilities handle partial or blocked directory listings by guessing object paths and assembling missing pieces from loose files. Investigators and red-teamers use it to demonstrate the risk of... -
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CleanCode
.NET, PowerShell, SQL, Java, Perl, and Javascript developer libraries
Develop clean code with our .NET components (plus PowerShell, SQL, Java, Perl, and JavaScript components as well!). CleanCode highlights include user controls, a validation engine, a diagnostic system, an XML/HTML pre-processor, and a variety of articles on code design. -
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quattor is a system administration toolkit providing a powerful, portable and modular toolsuite for the automated installation, configuration and management of clusters and farms running UNIX derivates like Linux and Solaris. Quattor no longer uses SourceForge for hosting, please see http://github.com/quattor for source code and http://www.quattor.org for more up-to-date information about the project.
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Wireless Universal Resource File
Handset Detection for Mobile Applications. Device Description Database
WURFL lets you detect thousands of types of mobile devices accessing your web service and take decisions based on what that device can or cannot do. With WURFL, you can optimize mobile web content, effectively deliver advertisements, or analyze mobile traffic. WURFL will read HTTP requests from mobile browsers and search the Device Description Repository (DDR) for the corresponding device properties (i.e. capabilities). WURFL will return the device capabilities to your application, which... -
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Afterglow Theme
A minimal dark Theme for Sublime Text 2 and 3
...Installation is straightforward through popular package managers, and the settings are simple to tweak for font weight, caret style, and selection emphasis. By balancing saturation and contrast, Afterglow reduces eye fatigue during long sessions while preserving quick visual parsing of complex files. -
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It's a web application which provides a unify solution to stat. CVS/SVN repository modules code change information and generate html reports. User can browse line of change, file of change, code diff, check-in comment and so on, it can stat. more repository modules one time. After repository modules configured, stat. is simple like a search.
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Stat cvs/svn Code Change
stat. cvs,svn code changes and generate html report
It's a web application which provides a unify solution to stat. CVS/SVN repository modules code change information and generate html reports. User can browse line of change, file of change, code diff, check-in comment and so on, it can stat. more repository modules one time. After repository modules configured, stat. is simple like a search. It's the mirror project of CodeChangeViewer: http://sourceforge.net/projects/ccv/. -
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This is a apache v2.0 authentication module. Based on html form authentication and cookie authentication session. Cookie session are stored in memcache deamon. Can be used has an simple "Single Signe-On" (SSO). All the code source and the bug tracking has migrated to github: https://github.com/ZenProjects/Apache-Authmemcookie-Module All the documentation are here: https://zenprojects.github.io/Apache-Authmemcookie-Module/
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Perl System Test
(PEST)
Perl System Test (PEST) is a test harness, written in Perl, for running processes on a distributed testbed via SSH. Test processes are defined in a simple config file for execution on remote hosts, enabling a tester to run tests in serially or in parallel. Processes are as non-blocking and un-buffered as possible. The harness redirects process output to an individual log for each process and logs process metadata. It captures the return code of each remote process and interprets 0 as pass and everything else as fail, enabling it to run tests written in any language. ...
