Search Results for "linux command" - Page 16
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Showing 1524 open source projects for "linux command"
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This is a command line date/time manipulation and formatting program, very useful in scripts. You can easily add or subtract days, hours and/or minutes from a specified date. Supports all date(1) output formats plus more.
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The Khepera III Toolbox is a collection of scripts, programs and code modules for the Khepera III robot. It allows for easy access to all sensors and actuators of the robot and provides a lot of standard programs.
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PerlSCAP
Perl implementation of a SCAP benchmark tool
Interprets XCCDF checklists referencing OVAL machine checks and uses them to determine a machine's benchmark state. A XCCDF results file is generated as output. -
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modDFS
Find whether a KEGG module is complete in a proteome
Given module definitions and reaction information based on a KEGG database, modDFS does a depth first search to find whether a set of KOs are sufficient for completion of a module. For cases where only 1 absent KO would've been enough for module completion, that module is reported to be complete(only lenient). For cyclic modules, completion is defined as having all the module reaction steps present. Again, lenient completion cases are reported. Also, all absent reactions are reported so that... -
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extract-ios-contacts
Extracts the IOS contacts to a CSV file
A Linux utility that extracts the IOS contacts and exports it to a Google Contacts CSV file. -
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Tab2MAGE uses a flexible spreadsheet format for MIAME annotation of microarray experiments. Tab2MAGE spreadsheets may be submitted directly to ArrayExpress, or used to generate MAGE-ML for data exchange.
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ieid
program for adaptive code rating
The Program creates an Folder with Data for Auto rating of encoding descriptors. For this purpose codes with know encoding labels are analyzed. Code with unknown labels is statistically analyzed to recover the missing encoding. The Software is able to analyze mime type encoded e-mail. An example database for message encoding detection is provided. -
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The MAGE-TAB Utilities project provides a simple Perl SDK for parsing, manipulating, visualizing and exporting data in MAGE-TAB format. All file releases are now being made via CPAN.
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regutils
regutils - Win9x registry tools in Unix C & INI file tools in Perl
Regutils is a collection of programs to help in managing the configuration of Windows software and systems. The utilities can be used to apply user and machine specific customizations on the fly as users log in or as machines are booted. They can also be used to identify and correct similarities and differences between software configurations. These may be helpful in debug situations or when consistency or differences need to be maintained. The regutils package was initially created... -
Ship Agents FasterGemini Enterprise Agent Platform lets you rapidly build, scale, govern and optimize production-ready agents grounded in your organization's data. The platform enables developers to build custom or pre-built agents for virtually any use case. New customers get $300 in free credits.
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seppdflatex
Build a large LaTeX book with separate linked chapters
seppdflatex is a Perl script which automates a lot of the tasks needed to compile PDF documents from LaTeX source for a multi-volume book, or a book with many huge chapters which you may not want as a single document, but which should all be unified by cross-references and external hyperlinks, so a PDF reader will open a link to an external chapter PDF file. The Table of Contents and LOF and LOT are made for all chapters, and the TOC, LOF, LOT are all hyperlinked to the correct external PDF... -
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MGEScan is a suite of two software tools MGEScan-LTR and MGEScan-non-LTR. MGEScan-LTR is a software that can identify new LTR retrotransposons without relying on a library of known elements. It uses approximate string matching technique and protein domain analysis to detect intact LTR retrotransposons. In addition, it identifies partially deleted or solo LTRs using profile Hidden Markov Models (pHMMs). MGEScan-non-LTR is a software for the identification of non-LTR retrotransposons...
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docx2txt
Perl based utility to extract formatted text content from MS Docx file
Docx2txt is a Perl based command-line utility to convert (even corrupted) Microsoft docx documents to reasonably formatted text files, along with appropriate character conversions. Apart from Perl it also requires a command line unzipping program like unzip/7z/pkzipc/wzunzip. -
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Site Tools
A collection of tools to facilitate the management of websites
The sitetools project is a collection of tools to facilitate the management of websites. It includes individual programs that perform separate tasks to help make a web masters daily routine easier to manage and less error prone. -
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Net Profiler
Build custom filter for your network based off of common communication
NetProfiler builds a custom filter (BPF) for your network based off of common communications. FilterAnalyze-NetProfiler analyzes the custom filter built by NetProfiler (it may work with other filters as well). -
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x2fasta
Tools for reformatting common sequence formats into fasta
A collection of tools to transform common biosequence formats (e.g. EMBL, SWISS-PROT, UniProtKB, GenBank and RefSeq) into the fasta sequence format. -
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Average
Command-line calculator of basic statistics.
Average is a simple and fast command-line Perl utility for calculating basic statistics on a list of numbers (one number per line). It works as a traditional Unix filter and can be used as part of those greatly useful chains of piped commands. It calculates average (arithmetic mean), standard deviation, median, total sum, minimum and maximum values present, and shows the number of processed numbers. Entry can by a text file (any column can be specified, default is the first) or... -
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Protdraw
Create portable, flexible domain drawings of protein sequences
For ProtDraw to work on MacOS Yosemite, you must install a patched Pert Tk. Go to https://github.com/eserte/perl-tk and click the Download zip button. Run the unzip command, cd to the extracted directory and follow the directions in the 'INSTALL' file (using 'sudo' if necessary). ProtDraw creates flexible, easily-interpretable and portable illustrations of the domain structures of input sequences. ProtDraw is accompanied by makeProtDraw, a helper program which runs hmmer3 on a specified... -
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FreeOSEK RTOS
Project has been move to https://github.com/ciaa/Firmware
The project is not more active, we have fix a lot of issue and perform many improvements. These are now deliverd as part of a new project: https://github.com/ciaa/Firmware ---- FreeOSEK is a scalable solution for embedded system. FreeOSEK OS is based on OSEK RTOS specification (OSEK-VDX). visit us in: http://opensek.sourceforge.net -
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SEO & SEM - Marketing Text Writer
Open Source SEO & SEM Text Creation Tools for free Article Writer
Open Source Tool for Search Engine Optimization (SEO & SEM) used for automatic content processing. These SEO Content Genrators and Article Writers based on Text... -
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VIGOR3
Annotation of Viral Genomes
VIGOR is a tool for annotating coding genes in viral genomes. It was developed by Jeffrey Hoover and Shiliang Wang for The JCVI Genomic Sequencing Center for Infectious Diseases (GSCID). http://www.biomedcentral.com/content/pdf/1471-2105-11-451.pdf contact: Jeff Hoover 301-540-7858 jefhv@aol.com -
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CAPE RNA
Classification based Analysis of Paired Expression data of RNA
CAPE RNA is package of command-line tools for integrated analysis of miRNA-mRNA expression data. miRNA-mRNA interaction states are assigned for each sample independent of a priori known experimental groups. Using these interaction classifications Jaccard-indexes are calculated to evaluate the quality of a predicted interaction based on the distribution of assigned interaction states compared to experimental groups. In addition, negative correlation between miRNA and mRNA expression can be analyzed. -
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Sqlninja is an exploitation tool to be used against web apps based on MS SQL Server that are vulnerable to SQL Injection attacks, in order to get a shell or extract data also in very hostile conditions. For more information please check http://sqlninja.sf.net
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Package Cacher
Transparent cache for Debian and RedHat packages (.deb and .rpm)
This is a transparent cache for Debian and RedHat packages (.deb and .rpm). It is based on apt-cacher available on Debian. It has been enhanced to handle RedHat repositories and files whose names are the same but the contents are different.