Search Results for "sql command line" - Page 10
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Showing 1609 open source projects for "sql command line"
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SBBS Users
Displays the users currently logged into your Synchronet BBS
Displays the users currently logged into your Synchronet BBS. This script is for Linux systems but the actual BBS can be either Linux/OSX or Windows -
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Term-Highlight is a highly customizable perl-compatible regexp highlighter for wide range of terminal emulators. Term-Highlight can be used as grep-like engine or command output highlighter. You can use it just to learn perl regular expressions!
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Woda, the Web Oriented Database
Mature SGBD in Perl with a web interface
WODA is a semi-relational database for beginners to work on data and to learn database basis. With web-based GUI and CLI. Currently in rewrite using Bootstrap for web UI. Built with beginners in mind, it is far easier than any other tool I know, while remaining powerful for advanced users (Perl langage is directly available). Databases can be defined, maintained, added-to, modified, and queried entirely through the web interface without programming. It comes from the 90's and thus is... -
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scriptLattes is an open-source system to create academic reports of groups based on curricula vitae of the Brazilian Lattes Database.
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Stop Storing Third-Party Tokens in Your DatabaseRolling your own OAuth token storage can be a security liability. Token Vault securely stores access and refresh tokens from federated providers and handles exchange and renewal automatically. Connected accounts, refresh exchange, and privileged worker flows included.
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rpmorphan
List packages that have no dependencies (like deborphan)
rpmorphan finds "orphaned" packages on your system (packages which have no other packages depending on their installation). A console and graphical interface is provided. It is a clone of deborphan debian software. It provides also some others rpm tools (rpmusage, rpmdep, rpmduplicates, rpmextra) -
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The Hspell Project
A free Hebrew spell-checker and morphological analyzer
hspell - Hebrew spellchecker -
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bspipe
An End-to-End Analysis Pipeline for BS-seq
BSpipe is a comprehensive pipeline from sequence quality control and mapping to functional analysis of differentially methylated regions: (1) sequencing quality assessment, (2) sequence cleaning, (3) sequence read mapping, (4) methylation quantification, (4) sample comparisons based on methylation profile, (5) identification of DMRs (differentially methylated regions), (6) annotation of DMRs, (7) functional analysis of differentially methylated genes, (8) generation of input files... -
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cado
Template-based code generation language.
Cado is a mature code generation language that operates on standard templates with embedded macros. It is useful for generating source code and other related content (tests, docs, configuations, etc.), deriving from a common project nomenclature. -
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Meraculous-2D
Eukaryotic Genome Assembler
---------------------------------------- IMPORTANT: Meraculous-2D has been superseded by the HipMer assembler, available here: https://sourceforge.net/projects/hipmer/ ----------------------------------------- Meraculous-2D is a whole genome assembler for NGS reads (Illumina) that is capable of assembling large, diploid genomes with modest computational requirements. Features include: - Efficient k-mer counting and deBruijn graph traversal - Two modes of handling of diploid... -
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Tentacle is a cross-platform file transfer protocol that aims to be secure and easy to use. The client and server are designed to be run from the command line or called from a shell script. Secure file transfers to and from the server are supported.
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Sagacity
Security Assessment Data Management and Analysis Tool
We have migrated development of Sagacity to GitHub at https://github.com/cyberperspectives/sagacity Sagacity is a vulnerability assessment and STIG compliance data management tool designed to make security testing more efficient, effective and complete. Security assessments, especially those done for DoD and Federal organizations, produce tremendous amounts of scan and compliance data that security engineers must sort through and deconflict, identify untested requirements, and somehow... -
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As of 2018-06-28, this project has moved to https://github.com/AdamaJava. This copy of the code will remain but all new code updates and releases will be from the new site. Java code developed by the Australian ICGC team for operating on next-generation sequencing data. This code is currently being maintained and expanded by the QIMR Berghofer Genome Informatics team (http://www.qimrberghofer.edu.au/lab/genome-informatics/) More details and documentation can be found on the...
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Remote backup tools with Backup generation management, save disk space, filesystem transparent operation based on rsync protocol.
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Simple Keyring In Perl (Skip)
Skip is a lightweight and portable tool for managing/using secrets
Skip is a lightweight and portable tool for managing secrets such as login passwords and easily automating the programs that use them without leaving the secrets unencrypted on disk. Skip has been tested successfully with several common programs including fetchmail, getmail, msmtp, scp, ssh, and ssh-add without the need for any modification on Linux, OSX, and Windows under Cygwin. -
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CSBB-v2.1 [CSBB-v3.0 is now available]
Computational Suite For Bioinformaticians and Biologists
CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R, java and ruby in background for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the need to write programming code. -
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owfs and owhttpd
Project moved to https://github.com/owfs/owfs/
Please note that OWFS source code, and all Issue/Tickets/merge requests have now been moved to https://github.com/owfs/owfs/. Developer mailing lists will still be kept at Sourceforge. ---- OWFS -- 1-Wire file system. Use the Dallas 1-Wire and iButton chips with standard filesystem commands. Create temperature loggers. Monitor everything. OWHTTPD -- same system, only used as a light weight web server. OWFS is also ported to embedded routers, Mac OSX and Windows. Basically you can use... -
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Audit Test Project
Test suite for Linux audit and related security functionality
audit-test is a test suite designed to provide automated testing for the light-weight audit framework that first appeared in the 2.6.4 kernel. It has been used regularly since RHEL4 and has most recently been updated for RHEL6.3 and SLES11. The test suite now covers functionality beyond audit and includes the automated tests required for the BSI OSPP, including labeled security and virtualization. -
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CSBB-v3.0
CSBB - Computational Suite for Bioinformaticians and Biologists
CSBB is a command line-based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R, java, python and ruby in background for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the need to write programming code. -
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maff-viewer
Viewer / Extractor for compressed HTML in the Mozilla Archive Format
Viewer / Extractor for compressed HTML in the Mozilla Archive Format (*.maff file) Maff-viewer works fully offline and uses your prefered browser to display the extracted maff-file content. For details see https://sourceforge.net/projects/maff-viewer/files/Maff-Viewer_Doku.pdf/download -
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BisSNP
Bisulfite-seq/NOMe-seq SNPs & cytosine methylation caller
Now in Github: https://github.com/dnaase/Bis-tools/tree/master/Bis-SNP BisSNP is a package based on the Genome Analysis Toolkit (GATK) map-reduce framework for genotyping in bisulfite treated massively parallel sequencing (Bisulfite-seq, NOMe-seq and RRBS) on Illumina platform. It uses bayesian inference with either manually specified or automatically estimated methylation probabilities of different cytosine context(not only CpG, CHH, CHG in Bisulfite-seq, but also GCH et.al. in other... -
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CABBaGe
Classification Algorithm Based on a Bayesian method for Genomics
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Panacea
PAN And Core-gEnome Analysis
A tool to calculate the Pan-Genome of a set of annotated genomes -
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