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Freeplane is a widely used mind mapping tool. GTD is a time management methodology by David Allen. Freeplane GTD is an addon, that can collect tasks specified in a mindmap, thus allowing the users of Freeplane to use the concepts of GTD in their mind

GloboNote is a free and easy to use desktop note taking application. It lets you create sticky notes, to-do lists, journals, reminders and other notes in one place. There are no limits to the number of sticky notes you can create. Notes can be organize by groups and search using the search tool. GloboNote can be run in any OS that has Java 8 installed.

UPDATE 2024: Get a new version here: https://github.com/ivoras/EncryptedNotepad2 "Encrypted Notepad" does only one thing, but aims to do it perfectly - a Notepad-like simple text editor where files are saved (and later loaded) encrypted with industrial strength algorithms. Available both for the desktop (as a Java application) and on Android. Unencrypted data is never stored on-disk. Source is released (on SourceForge) under the BSD license.

KTNotes is a fast, advanced note-taking tool built for the Kindle Touch. With an emphasis on mathematical formulas, fractions and subscripts; the greek alphabet; and other Ǝxtra ∫pecial characters are available right on the main keyboard. Using prebuild binaries for the Kindle Touch of ffmpeg and mplayer, audio recording and playback of lectures are available right in the program. Finally, as KTNotes is built as a Kindlet, KTNotes is launchable right from the main page, with an easy...

Pliny is a tool to support scholarly research by assisting with the creation, organisation and management of notes, annotations, and other scholarly resources.

A note-taking and organisation application for use by students in lectures