Open Source C# Molecular Science Software

ElemenTable is a colorful periodic table of elements application for Windows (requires .NET Framework v.4.5 or higher). It gives many important information, e.g. atomic mass or electronegativity, about all current chemical elements from Hydrogen [1] to Oganesson [118]. All elements are ordered in a colorful periodic table layout which can be changed in color to show either the element groups, the element states or the element types. The data of the chemical elements is hosted at https://github.com/bluegrams/Periodica.Data. Also have a look at the new periodic table app for Windows 10 with many more features at https://www.microsoft.com/store/apps/9PB2TD7P6DT3.

StochFit utilizes stochastic fitting methods to model specular x-ray reflectivity or neutron reflectivity data. It provides an easy to use graphical user interface for both model dependent and model independent methods.

A nano cad program used to model nanotechnologies and maybe in later versions simulate the models.

TraceViewer provides several functionalities needed by any biologist who wants to efficiently analyse his/her trace data.

The core of this program is a interactive periodic table of elements but also has a handful of goodies Including: A bohr model generator, a nice mix & match memory game, a nifty find dialog. The periodic table is built for quick lookup of basic info

Tracking markers shown faintly in projections of rotating rigid body with translational jitter based on uniqueness of structures

Cscape is an application for visualizing and navigating through data from a Reverse Phase Protein Microarray (RPMA). Cscape uses the Google Maps API to map the RPMA data on top of an image of a cancer cell and its associated pathways.

Our mission is to create and provide a digital research infrastructure built on today's most advanced technologies for students and professionals to collaborate, contribute, and share bio-medical innovation on a non-profit basis. www.edencore.net

F@H League Web App is a simple ASP.Net Web application that allows you to create a League of Folding@Home Teams you are interested in and view a range of league tables, statistics and Graphs.

FacScan is a predicting tool of transcription factor binding sites. FacScan scans multiple DNA sequences, e.g. from microarray experiments, for potential binding sites of regulatory transcription factors. Common sites shared by the genes will also b

LSG is a Windows application framework designed for visual data integration and based on Microsoft .NET 2.0 and CAB. An admin utility manages LSG apps, modules, events, and services, and a client integrates the modules and provides functionality hooks.

Nature is an open source library for computing thermochemical and kinetic properties of complex gas mixtures. The library supports the CHEMKIN data format and a native script for defining complex gas mixtures. Nature is written in C# and does not depend on any third party tool or library. Nature interoperates natively with any .NET language including the FTN95: Fortran 95 compiler. The primary goal of the project is to deliver the open source that provides the foundation for potentially complex CFD solutions capable of carrying computing in the distributed environment and particularly the Cloud computing.

Sample code demonstrating how to use OmniDriver to drive Ocean Optics full range of spectrometers from C, C++, C#, Java, LabVIEW, Delphi, MATLAB and more.

PeptideManager is aimed to help the pre-selection of unique peptide sequences for the design of targeted proteomics approaches. Its main advantage is to allow the presence of a host/background proteome (e.g., xenograft samples) during this peptide sequences selection. PeptideManager can build peptide sequences databases from various public repository (SwissProt/Trembl/UniProt, RefSeq, IPI) and various proteases. For any use, please refer to the publication: doi: 10.3389/fgene.2014.00305 http://journal.frontiersin.org/Journal/10.3389/fgene.2014.00305/abstract

ProTag integrates biological web services and online databases seamlessly into the Microsoft Office applications Word, Excel and PowerPoint. It is extensible and offers smart tagging of biological objects (e.g. protein names) within Office documents.

This cleans unwanted textual information from DNA sequencing results

This SimCell.net project is an independent port of the SimCell java app. The goal for this effort is to model molecular self assembly (cell membranes and other structures that not classified as molecules).

A Collection of STAR/CIF processing libraries and related tools, including sub-projects: AStar, TEStar and others...

is a interactive molecular visualisation program designed especially designed for coarse-grained simulation of non-spherical particles. Ellipsoids (Gay-Berne), disks, and custom shaped uniaxial particle (e.g. pear-shaped particles) can be represented.