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JOELib/JOELib2 is a cheminformatics library which supports SMARTS substructure search, descriptor calculation, processing/filtering pipes, conversion of file formats, 100% pure Java, and interfaces to external programs (e.g. Ghemical) are available.
mzSquash is a compression tool for mzML files, an XML-based standard developed by HUPO PSI (http://www.psidev.info) for spectrometer output. All development has ceased. The tool may be useful educationally, but is not a recommended utility.
Java GUI to analyze one (or more, in batch mode) datasets with several feature selection methods at the same time and also performing an "ensemble" analysis. It can be easily extended to include any feature selection algorithm.
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In randomised controlled trials, interventions may have several components. This simple program will enable you to depict any randomised trial graphically It will standardise the construction process and ensure every step is covered. For more information
This project is the development of a Selection Tool primarely used in ImageJ and possibly in GIMP. It is based in LiveWire and SNAKES methods and will firstly be used in IVUS (intravascular ultra sound) images.
This project aims to make open source tools for medical Studies of Diagnostic Accuracy, wich are neglected by most commom statistical tools.
Most tools will be based on the STARD.
This project is Java API to access Unicont Cardio Pager (http://unicont.ru/index2.html) device. This API allows access pager or get ECG data via serial port and through a modem line (using proprietary Windows ActiveX).
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The Health Manager Java SDK is an interface definition to connect wireless medical devices with a Java application. It includes also an implementation that simulates real devices and a sample application demonstrating the usage.
Open Screening Environment is a open source system for management of High Throughput Screening related experiments. The platform consists of new research tools that will enhance significantly management and analysis of HTS data. More information can be f
The Disease Simulation Framework (DiSiF) represents a spatial simulation environment for infectious viral disease spread. The framework currently embodies a very simple framework for simulation in 2D space with focus on SARS and the Common Flu.
The goal of the GeneText project is the development of a software package that will enable users to dynamically generate an information summary page from multiple sources given a search term. Fields of interest are biology, genetics and bioinformatics.
Xebra is an open source, cross-platform, thin client and server for web-based distribution and clinical review of medical imaging results. Xebra is based on the latest open industry standards including JPEG2000, WADO and IHE XDS-I.
Referent Tracking (RT) is a novel approach to store data in electronic (health) records by referring to real world entities by means of a unique ID. The RT System is a back-end that uses RDF as a representation, but adds to it a referential semantics.
WebPagesChanges provides a platform for complete, easy and high accuracy marking of updated information in web pages. The user, with one click, can check for new information and see the update status by the colored mark of the information and their pages
GRIP is a clinical decision support system for controlling glucose levels in critically ill patients. GRIP may replace paper-based protocols for intensive insulin therapy and can use arbitrary complex rules to advise nurses on insulin doses.
MobHealth is an extensible mobile health framework/API written in JavaME. The current version supports two sensor-data formats (e.g. used by AliveTec). It already provides higher-level classes for data recognition like body position or hypoxia-detection.
Large set of functions for biological records (ECG, EEG, phono), datastore, datamining and analysis (HRV, QT, RR, ST). The application is written in Java, so that it is assumed to work on all devices. It runs as a desktop or client-server application. It
JNutrix is a Java language application. You can search and find more then 130 nutrient values, if they are recorded, of over 5400 foods usually found on the Canadian market ( or 7200+ foods for the U.S.A. version ).