Search Results for "simple-scan"
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Showing 45 open source projects for "simple-scan"
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Grassroots DICOM
Cross-platform DICOM implementation
...It is accessible from Python, C#, Java and PHP. It supports RAW, JPEG, JPEG 2000, JPEG-LS, RLE and deflated transfer syntax. It comes with a super fast scanner implementation to quickly scan hundreds of DICOM files. It supports SCU network operations (C-ECHO, C-FIND, C-STORE, C-MOVE). PS 3.3 & 3.6 are distributed as XML files. It also provides PS 3.15 certificates and password based mecanism to anonymize and de-identify DICOM datasets. -
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Iso2Mesh - A 3D Mesh Generation Toolbox
A 3D surface and volumetric mesh generator for MATLAB/Octave
A simple yet powerful mesh generator based on MATLAB/GNU Octave language, creating finite-element mesh from surfaces or arbitrary 3D volumetric images (such as MRI/CT scans) with fully automatic workflows. -
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Open Narrative Creator
Emergency Medical Services Narrative Generator
Narrative Generator for Emergency Medical Services Patient Care Report. I have been working as a Paramedic since 2004. I wanted to create a simple narrative generator for Patient Care Reports. The design is simple and portable. It is fully customizable and runs under LibreOffice, Microsoft Office, and Google Docs. LibreOffice is available as a portable application to make this run completely from USB drive. It is highly customizable and represents years of work as the needs of PCRs have changed. ... -
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OxyWitleaf2CSV
Witleaf pulse oxymeter BIN format data decoder.
The simple program is a Witleaf handheld pulse oxymeter BIN file format data decoder. It reads BIN-files produced by popular professional pulse oxymeters manufactured by Shenzhen Witleaf Medical Electronics Co., Ltd. (like the WIT-S300 shown in the photo on the project icon) and produces a CSV-formatted output with the extracted data to stdout (gets printed to the console if not directed otherwise). -
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SimPET
A web platform for the MC simulation of realistic brain PET data
SimPET (http://www.sim-pet.org) is an open, efficient, and user‐friendly online platform for the generation of synthetic brain PET datasets. The platform offers the ability to generate realistic activity and attenuation maps from patient's PET/CT and MRI images. These maps can then be simulated, and sinograms and simulated images can be downloaded. More advanced features can be obtained by using the SimPET... -
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Binaural Beat Generator
A lightweight binaural audio simulator for Debian based Linux systems
This program was developed to simulate the effects of specific sound frequencies on the human brain. By playing slightly different sine wave frequencies into the left and right ears, a third, perceived frequency equal to the difference between the two (e.g. a 10 Hz Alpha wave) is created in the brain. This method is based on scientific research (Heinrich Wilhelm Dove, 1839, and modern EEG studies) exploring the synchronization of brainwaves, increasing focus, reducing stress, and... -
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MAGeCK
Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout
MAGeCK2 is here: https://github.com/davidliwei/mageck2 Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent genome-scale CRISPR-Cas9 knockout screens technology. For instructions and documentations, please refer to the wiki page. MAGeCK is developed by Wei Li and Han Xu from Dr. Xiaole Shirley Liu's lab at Dana-Farber Cancer Institute/Harvard School of Public Health, and is maintained by Wei Li lab at... -
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dualword-rt
measuring bimanual simple visual reaction time
measuring bimanual simple visual reaction time Source code: http://github.com/dualword/dualword-rt -
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HL7 Inspector
HL7 Inspector is a tool for managing HL7 messages
The HL7 Inspector project has moved to Bitbucket. https://bitbucket.org/crambow/hl7inspector All new releases can be found there. The web-based version can still be found at www.hl7inspector.com -
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10
PPIXpress
specific protein interaction networks from transcript expression
Although protein-protein interaction networks are an ubiquitous component of modern systems biology, comparatively few efforts have been made to tailor their topology to the actual cellular condition under study. Since a simple reduction of the networks to the subset of expressed genes only scratches the surface of higher organisms’ regulatory capabilities, we propose the advanced method PPIXpress that allows to exploit expression data at the transcript-level and is thus able to also reveal alterations in protein connectivity caused by alternative splicing. ... -
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DicomReader is a simple Java Dicom files decipher. It handles headers and images within as well; data (headers and pixel-value images) will be saved into ascii clear text files. A pgm version of the image files is also provided.
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This is a very simple OpenGL visualization library with a 3D and 4D volume renderer. It can easily be reused in other projects (e.g. with medical volumes). It is just perfect for learning or great if you like to hack your own code.
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yb Medical Dictionary User Customizable
java8 based yb (creator's name) medical mini dictionary with text file
As a medical blogger, I felt that there is a need for platform-independent medical dictionary. Hence 'java 8'. The dictionary must be customizable ie. user should be able to add, delete words. Hence, the use of text file for medical data, instead of xml or some database or sql or some hard-to-understand things. Java 8 can be invoked even from usb pen drives. We have used only one .java file which contains the main class. Compiling it yielded only two classes. Thus simplicity is... -
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...Ogles started out as a planning system for frame based stereotactic neurosurgery. Ogles(1) is discontinued. Release candidate (RC) is Ogles2b. Ogles is accompanied by a simple DICOM reader and NIfTI converting tool (Sdr2).
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FieldTrip
The MATLAB software toolbox for MEG and EEG analysis
FieldTrip is the Matlab toolbox for EEG and MEG data. It includes algorithms for simple and advanced analysis, such as importing, preprocessing, time-frequency analysis, source reconstruction, statistical testing and connectivity analysis. -
16
CLEiM
Cross Lingual Education in Medicine
...This system has been developed by the Intelligent System Group GSI (http://www.esi.uem.es/gsi/) at UEM University. We do NER (Named Entity Recognition) based on GATE platform. The installation is simple, you can use it as a Web application. It has been tested under apache-tomcat. The original system has been successfully used to carry out active learning activities with medical students. However, it could be interesting in much more knowledge fields. -
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c4nhanes
command line tools for processing tab delimitted statistics
The national health and nutrition examination survey (NHANES) is done by the center for national health statistics. Data is made available for public use by this group for research; however, it is in a format that is not universible accessible. This provides the data in a simple format as well as a set of tools to manipulate the data. It can interface with open office and libreoffice using their csv filter. -
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WM Hyperintensities Segmentation Toolbox
Open Source White Matter Hyperintensities Segmentation Toolbox
Wisconsin White Matter Hyperintensity Segmentation [W2MHS] and Quantification Toolbox is an open source MatLab toolbox designed for detecting and quantifying White Matter Hyperintensities (WMH) in Alzheimer’s and aging related neurological disorders. WMHs arise as bright regions on T2- weighted FLAIR images. They reflect comorbid neural injury or cerebral vascular disease burden. Their precise detection is of interest in Alzheimer’s disease (AD) with regard to its prognosis. Our toolbox... -
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noise-free-cnv
program for analyzing and manipulating DNA microarray data
...Direct inspection of the microarray data with the noise-free-cnv software helps to appreciate the quality of the data and to identify artificial calls. With noise-free-cnv it is possible to visualize individual datasets, to compare different datasets and to perform simple transformations. The visualization and the suppression of genomic waves, the comparison of two datasets by subtraction and the simultaneous inspection of LRR and BAF values are amongst the most frequent applications of this software. This program is able to read and write files suitable for PennCNV or raw files containing measured values of any kind. -
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WaveSorter
A powerful, versatile tool for offilne spike analysis and sorting
...The user may cluster waveforms manually or via one of several popular clustering programs. The classification along with waveform properties (width, etc.) can be saved to disk in simple text files. WaveSorter is written in C++, utilizes the GNU Scientific Library for all computation, and is highly parallelized; on modern hardware it can handle files containing several 100,000s of waveforms per channel with almost no noticeable loss in GUI fluidity and <1sec lags for files with >1,000,000 waveforms per channel. It can be run in batch mode. ... -
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RVASSOC is a simple program for performing various tests for association between genotypes and disease status using sequence variants from unrelated cases and controls. It was designed to accommodate both rare variants and missing genotypes.
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On The Mark is a video and image scoring system that allows one to mark any number of events and durations through a simple, easy-to-use graphical interface.
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"Voxel Surface" is a MATLAB program that creates exact surfaces from 3-D voxel data such as from MRI and CT Scan. It replaces MATLAB isosurface, isocap and isonormals functions, which have several deficiencies. See README file and Gallery pictures.
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Glass Brain is a tool specifically designed for displaying neural connections within the human brain given multidimensional scan data and a connectivity graph. This project benefits from Qt, VTK, ITK, and CMake.
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Earnest is a A PHP-MYSQL AI EXPERT SYSTEM for creating powerful expert system easily. Its simple PHP API can also be called from JAVA, browsers or other software to perform GIS and other comparisons. Also has ability to create XML results.
