Search Results for "linux command" - Page 2
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Showing 83 open source projects for "linux command"
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Mauve computes and interactively visualizes genome sequence comparisons. Using FastA or GenBank sequence data, Mauve constructs multiple genome alignments that identify large-scale rearrangement, gene gain, gene loss, indels, and nucleotide substutit
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FieldTrip
The MATLAB software toolbox for MEG and EEG analysis
FieldTrip is the Matlab toolbox for EEG and MEG data. It includes algorithms for simple and advanced analysis, such as importing, preprocessing, time-frequency analysis, source reconstruction, statistical testing and connectivity analysis. -
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This is a sophisticated & integrated simulation and analysis environment for dynamical systems models of physical systems (ODEs, DAEs, maps, and hybrid systems). It supports symbolic math, optimization, continuation, data analysis, biological apps...
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Integrated Hospital Information System. PHP,mySQL,PostgreSQL. Surgery, Nursing,Outpatient,Wards,Labs, Pharmacy, Security,Admission,Schedulers, Repair, Communication & more. Multilanguage, WYSIWYG forms, userconfig, embedded workbots. Modular & scalab
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OpenCFU
An application to count bacterial colonies and other circular objects
OpenCFU is a completely open source lightweight application designed to enumerate clustered circular objects such as bacterial colonies. It can handle digital pictures as well as live stream from a video device/webcam. OpenCFU is cross-platform, fast, reliable and allows the user to implement intuitive filters. Additional information is provided on the website: http://opencfu.sourceforge.net/ OpenCFU is published on PLoS... -
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A collection of code, bundled into a single R package, to perform several aspects of data management, image pre-processing, data analysis and statistical inference related to the quantitative analysis of dynamic contrast-enhanced MRI (DCE-MRI).
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SPADE
A toolkit for developing and deploying protein structure algorithms.
The Structural Proteomics Application Development Environment is a Python tool kit for developing and deploying bioinformatics applications. Handles graphics, analysis, and modeling of protein sequence and structure. Source and Win installers available. SPADE source code can be cloned from http://www.github.com/deaconjs/SPADE. -
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Fekke's BMI calculator
C# BMI Calculator with wizzard.
An application written in C#, which will assist you in calculating your Body Mass Index. -
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c4nhanes
command line tools for processing tab delimitted statistics
The national health and nutrition examination survey (NHANES) is done by the center for national health statistics. Data is made available for public use by this group for research; however, it is in a format that is not universible accessible. This provides the data in a simple format as well as a set of tools to manipulate the data. It can interface with open office and libreoffice using their csv filter. -
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PipeDream is a *nix processing pipeline for analysis of large single or multi-modality neuro-imaging data sets. PipeDream is no longer being updated in this repository. Code will remain here as an archive of processing methods that were applied to published data using PipeDream. If you are looking for data organization and pre-processing code, please see the new version of PipeDream on GitHub: https://github.com/cookpa/pipedream It is still very much a work in progress but has...
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CoVEC
Consensus Variant Effect Classification
The package provides SVM models to be used with SVMlight (http://svmlight.joachims.org/) for drawing a consensus out of individual 3rd-party predictions about the effect of mutations. The 3rd party tools are SIFT, Polyphen2, SNPs&GO and Mutation Assessor. The package also provides a series of Perl modules and scripts to assist in the preparation of data. The modules can be used to build custom tools and pipelines, whereas the scripts provide basic executable implementations based on the... -
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Boundary Shift Integral
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PopED (Population Experimental Design) is a software tool for computing optimal experimental designs. The software has been developed with an emphasis on drug trials based on population models (non-linear mixed effects models).
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Matlab tool for plotting multi-channel biomedical signals. It is designed for researchers on both engineering and medicine who have to collaborate to visualize and analyze signals. It is the ideal tool to plot electroencephalogram (EEG), Foetal Heart Rate (FHR) and many other signals with the standard tools used in clinical routine.
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RVASSOC is a simple program for performing various tests for association between genotypes and disease status using sequence variants from unrelated cases and controls. It was designed to accommodate both rare variants and missing genotypes.
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SOAPsv
SOAPsv: is a program for detecting the structural variation
This is an approach that complements previous methods for reliable homozygous structural variation identification. Our approach accurately determines genotype and breakpoints relative to a reference genome based on de novo assembly of Illumina Genome Analyzer sequencing data. In this method, we examined only homozygous structural variations because detecting heterozygous structural variations requires assembly of haplotype sequences, which is not yet possible using existing assemblers. -
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N-Sense
N-Sense Sensory substitution software
N-Sense is sensory substitution software. Whit goal to make sensory substitution and super senses available to everyone. N-sense uses hearing as it's input port and is(will be) capable to allow multiple senses trough it as vision, magnetic orientation, humidity, velocity,time, altitude... Almost any data from computer can be made into sense and included into project. N-Sense is modular by design, written mostly in c++ to allow optimal processing speed and uses OpenCv for Image/video... -
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BpMatch is an algorithm that, given 2 strings S and T, compute the maximum coverage of T using only subequence or reversed complemented subsequences of S, of minimum length l.
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This is a research-level program used to track protein translocation in live cell imaging experiments when the nucleus is not specifically marked by either stain or transfected fluorescent proteins.
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BLOSpectrum tools provide programs to automatically classify proteins according to SCOP database. In order to achieve such a goal, they implements all the required information theory widgets on BLOSpectrum fingerprints.
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Porcupine2 is a small wearable sensory unit for logging motion data and doing low-level activity recognition. The project includes electronic schematics for the hardware, software for the microcontroller and client-side software for hardware-interaction.
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Using the Mean Machine, even very large EEG data sets can be analyzed (artifact detection, evoked potentials, frequency analysis, ect.). It is a Matlab GUI application, which can also be run via the command line without GUI-support.
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qips is a software package for analyzing ChIP-seq ("Chromatin ImmunoPrecipitation on sequencing") data. It finds enriched regions of arbitrary lengths and is therefore especially suited for analyzing ChIP-seq of histone marks or polymerase.
