Showing 35 open source projects for "amine-platform"

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  • 1

    BBMap

    BBMap short read aligner, and other bioinformatic tools.

    This package includes BBMap, a short read aligner, as well as various other bioinformatic tools. It is written in pure Java, can run on any platform, and has no dependencies other than Java being installed (compiled for Java 6 and higher). All tools are efficient and multithreaded. BBMap: Short read aligner for DNA and RNA-seq data. Capable of handling arbitrarily large genomes with millions of scaffolds. Handles Illumina, PacBio, 454, and other reads; very high sensitivity and tolerant of errors and numerous large indels. ...
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    Downloads: 940 This Week
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  • 2
    Grassroots DICOM

    Grassroots DICOM

    Cross-platform DICOM implementation

    Grassroots DiCoM is a C++ library for DICOM medical files. It is accessible from Python, C#, Java and PHP. It supports RAW, JPEG, JPEG 2000, JPEG-LS, RLE and deflated transfer syntax. It comes with a super fast scanner implementation to quickly scan hundreds of DICOM files. It supports SCU network operations (C-ECHO, C-FIND, C-STORE, C-MOVE). PS 3.3 & 3.6 are distributed as XML files. It also provides PS 3.15 certificates and password based mecanism to anonymize and de-identify DICOM datasets.
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    Downloads: 93 This Week
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  • 3

    Stanford Data Miner

    Tools for integration and analysis of heterogeneous immunological data

    ...In brief, the system consists of two main web applications, a data integration app and a data exploration app. The data integration app is a fully custom Java "Web 2.0" product called Sherpa. Sherpa uses Seam, a platform integrating Asynchronous JavaScript and XML (AJAX), JavaServer Faces (JSF), the Java Persistence API (JPA), and Enterprise Java Beans (EJB) 3.0. The data exploration app is an open source business intelligence product called JasperServer (version 3.7), customized through supported configuration changes. Both apps use MySQL for back-end data persistence. ...
    Downloads: 0 This Week
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  • 4
    GNU Gluco Control (GGC) is diabetes management application. It helps managing user's daily data, food data. Has graphs, statistics, printing, diabetes devices support (meter, pump, CGMS). It works on any platform supporting at least Java 5 (1.5). Our repo moved to GIT (click on tab Git Code), Lowest supported Java now is 1.8 and project code base is in process of redesign (updating libraries and ways how application is built and run). IMPORTANT: Project was moved to GitHub: https://github.com/andyrozman/ggc on 4th April 2024
    Downloads: 4 This Week
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  • 5
    dsam
    The Development System for Auditory Modelling (DSAM) is a computational library designed specifically for producing simulations of the auditory system. It brings together many established auditory models within a flexible programming platform.
    Downloads: 0 This Week
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  • 6

    yb Medical Dictionary User Customizable

    java8 based yb (creator's name) medical mini dictionary with text file

    As a medical blogger, I felt that there is a need for platform-independent medical dictionary. Hence 'java 8'. The dictionary must be customizable ie. user should be able to add, delete words. Hence, the use of text file for medical data, instead of xml or some database or sql or some hard-to-understand things. Java 8 can be invoked even from usb pen drives. We have used only one .java file which contains the main class.
    Downloads: 0 This Week
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  • 7
    CanReg5 (moved to Github)

    CanReg5 (moved to Github)

    Canreg5 is a software package for population based cancer registries

    ...If these data are also coded and verified in a standard way, it facilitates the production of comparable analyses across registry populations. The main goal of the CanReg5 project is to provide a flexible and easy to use tool to accomplish these objectives. CanReg5 is a multi user, multi platform, open source tool to input, store, check and analyse cancer registry data. It has modules to do: data entry, quality control, consistency checks and basic analysis of the data It was designed with an emphasis on user friendliness, it has a modern user interface and is easy to navigate. Is available in several languages. ...
    Downloads: 1 This Week
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  • 8
    The Tolven platform and ePHR and eCHR applications enable interoperability across electronic health records for consumers and clinicians. Using Java, EJB3, Faces, Facelets, AJAX, relational database, and LDAP for security.
    Downloads: 0 This Week
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  • 9
    Eviewbox is a java imaging suite, its purpose is to view and spread native DICOM medical images and allowing for 2D reconstructions. EViewbox applet will allow to see the DICOM images on every platform.
    Downloads: 5 This Week
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  • 10

    Lab Storage

    Rediscover the Simplicity http://www.atgclabs.com/

    ...https://www.atgclabs.com/products/fw Freezer Web Access is a user friendly program designed to assist researchers with establishing an efficient system for storing frozen biological samples. FWA can track all of your research, development and process scale-up data in a single data storage platform, providing a organized and time effective means of keeping inventory and tracking samples on a large scale, while integrating sample storage and data storage on one easy-to-use format, minimizing confusion and increasing overall efficiency. With FWA, storage of samples is simple and systematic by entering them into the program according to their physical arrangements we create virtual containers matching these configurations and dimensions.
    Downloads: 2 This Week
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  • 11
    HHS Digital Media API Platform

    HHS Digital Media API Platform

    Syndicate text and multimedia content with this API and storefront.

    Use this suite of Application Programming Interface (API) platforms to share web content across multiple channels. Mobile and tablet applications, widgets, and web pages may use the APIs to deliver and update content. The APIs allow content reuse and reduce development costs and product time-to-market. The APIs are available as .NET or Java instances. For more information, see the ReadMe.txt file in the downloadable zip archive. The Centers for Disease Control and Prevention (CDC) and...
    Downloads: 0 This Week
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  • 12
    SoftSmithy is a platform for open source Java developers. The core is an extended Java utility library. In the future there may be open source software build on this library.
    Downloads: 0 This Week
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  • 13

    CLEiM

    Cross Lingual Education in Medicine

    ...This system has been developed by the Intelligent System Group GSI (http://www.esi.uem.es/gsi/) at UEM University. We do NER (Named Entity Recognition) based on GATE platform. The installation is simple, you can use it as a Web application. It has been tested under apache-tomcat. The original system has been successfully used to carry out active learning activities with medical students. However, it could be interesting in much more knowledge fields.
    Downloads: 0 This Week
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  • 14
    ECG2HRV

    ECG2HRV

    import and store ECG, associate to clinical data, automatic HRV

    http://www.youtube.com/watch?v=AOzpNMC-FXU This multi-platform application will enable the user to import digital CSV ECGs at any sampling rate and store them in an encrypted local DB along with relevant clinical data of the patient. It also performs automatic QRS complex detection and RR interval classification showing the output in a visual chart that the user can edit to correct sources with artifacts or pats with bad detections.
    Downloads: 1 This Week
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  • 15
    Actigraph analysis software
    Downloads: 0 This Week
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  • 16
    MOLGENIS can be used to generate databases for life science experiments (micrroarray, mass spectrometry, genomics) having a web user interface, csv exchange format, and programmatic interfaces (web services, rest, and r-project). See NatRevGen 8.
    Downloads: 0 This Week
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  • 17
    OpenClinica is a web-based electronic data capture platform for clinical research. See http://www.OpenClinica.org/ for downloads, documentation, and mailing lists.
    Downloads: 0 This Week
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  • 18
    PubCurator is a biomedical text mining platform and validation helper built on top of Eclipse RCP.
    Downloads: 0 This Week
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  • 19
    ...For NGS data Chipster contains a built-in genome browser, which highlights SNPs and automatically indexes BAM files and calculates coverage. Chipster’s ability to provide a biologist-friendly access to a powerful analysis platform is technically based on a desktop application user interface, a flexible distributed architecture, and the ability to integrate many types of analysis tools (command line, R/Bioconductor, Java, Web Services etc). The platform is generic and easily extendable to other areas, even beyond bioinformatics. For more information, please see http://chipster.csc.fi and http://genomebiology.com/1471-2164/12/
    Downloads: 0 This Week
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  • 20
    Mirth Connect is an open source cross-platform HL7 interface engine that enables bi-directional sending of HL7 messages between systems and applications over multiple transports.
    Downloads: 0 This Week
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  • 21
    Protege is a free, open-source platform that provides a suite of tools to construct domain models and knowledge-based applications with frame-based and Semantic Web ontologies.
    Downloads: 20 This Week
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  • 22
    Open Screening Environment is a open source system for management of High Throughput Screening related experiments. The platform consists of new research tools that will enhance significantly management and analysis of HTS data. More information can be f
    Downloads: 0 This Week
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  • 23
    Telemed is a grid based telemedicine web portal.
    Downloads: 0 This Week
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  • 24
    Xebra is an open source, cross-platform, thin client and server for web-based distribution and clinical review of medical imaging results. Xebra is based on the latest open industry standards including JPEG2000, WADO and IHE XDS-I.
    Downloads: 0 This Week
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  • 25
    WebPagesChanges provides a platform for complete, easy and high accuracy marking of updated information in web pages. The user, with one click, can check for new information and see the update status by the colored mark of the information and their pages
    Downloads: 0 This Week
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