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MCX is a GPU-accelerated, general-purpose, physically-accurate and feature-rich 3-D light transport simulator. It is one of the fastest simulators because it can use tens of thousands of GPU threads to simulate photons in parallel.
The continuous medial representation is a method for object representation and shape analysis. Hosted on Sourceforge are the source code for routines that fit medial models to anatomical objects.
Library to support quantitative analysis of radiotherapy data
Moved to: http://github.com/MIC-DKFZ/RTTB
RTToolbox is a software library, developed at the DKFZ to support quantitative analysis of treatment outcome for radiotherapy.
The RTToolbox was designed following object-oriented design principles and was implemented in the language C++. It supports the import of radiotherapy data (e.g. dose distributions and structure sets) from DICOM-RT format and other standard image processing formats by using a bridge to ITK.
The RTToolbox supports the full range of radiotherapy evaluation. Tools such as DVH calculation, arithmetic operations on dose distributions and structure relationship analysis are provided as a basis for further calculations. ...
CAnaBIS stands for "Computer Analysis of Brain Image Statistics". Its aim is to provide a C++ library of file I/O and efficient computational routines for NifTI brain images.
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STIR (Software for Tomographic Imaging Reconstruction) is Open Source software for use in tomographic imaging. Its aim is to provide a Platform-independent Object-Oriented framework for all data manipulations in tomographic imaging (currently only PET and SPECT)
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E-Cell's source code repository has moved to GitHub!
https://github.com/ecell
The development of E-Cell now continues on GitHub.
The Subversion repository was abandoned.
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E-Cell System is an object-oriented software suite for modeling, simulation, and analysis of large scale complex systems such as biological cells. It allows many components driven by multiple algorithms with different timescales to coexist in a model.
iMorph is a multi-platform 3D morphological Tool for analyzing microstructure of porous media. It includes vizualization automatic segmentation, tortuosity and skeletization.
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Open Source and Portable object oriented software for 3D digital image segmentation and visualization. Pipes and Filters Architechture.
Implemented in C++, and uses FLTK, VTK, ITK, TCL (plugins), and pipeline filters implemented in XML. DICOM support.