Search Results for "environment-modules"
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Showing 58 open source projects for "environment-modules"
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DICOM# open source project is intented to provide an OO class library for DICOM communication and will be developed purely by C# and running in .NET environment. DICOM# partially rewrites dcm4che open source project in C#. This subproject contains the GIT repo for the orignal dicom-cs project: https://sourceforge.net/projects/dicom-cs/.
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SDC
SDC facilitates development of dist. systems of medical devices.
...It is based on the upcoming SDC standard, which is specified by the IEEE in IEEE Std 11073-20702-2016 (Point-of-care medical device communication Part 20702: Medical Devices Communication Profile for Web Services), IEEE Std 11073-10207-2017 (Point-of-care medical device communication Part 10207: Domain Information and Service Model for Service-Oriented Point-of-Care Medical Device Communication), and P11073-20701 (IEEE Draft Standard for Service-Oriented Medical Device Exchange Architecture & Protocol Binding). The SDC standard has the goal to meet increasing demand for medical device interoperability in an Integrated Clinical Environment (ICE), see also ASTM F2761-1:2009. OpenSDC is not intended to be used in clinical trials, clinical studies, or in clinical routine. -
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Vascular prediction
Study develops predictive model to reduce 90-day readmissions.
...The model indicates that efforts to reduce vascular readmissions should prioritize emergency procedures. This risk stratification allows for better identification and prevention of unnecessary readmissions, crucial in an environment where preventing unplanned readmissions is increasingly important. -
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OmicSelector
Feature selection and deep learning modeling for omic biomarker study
OmicSelector is an environment, Docker-based web application, and R package for biomarker signature selection (feature selection) from high-throughput experiments and others. It was initially developed for miRNA-seq (small RNA, smRNA-seq; hence the name was miRNAselector), RNA-seq and qPCR, but can be applied for every problem where numeric features should be selected to counteract overfitting of the models. -
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Wings for NONMEM (wfn) is a set of DOS batch files and awk scripts to make the use of NONMEM more convenient. Simpler NONMEM execution: nmgo runname Extended control stream with user defined names for THETA(), etc. Automatic structured output ...
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DICOM# open source project is intented to provide an OO class library for DICOM communication and will be developed purely by C# and running in .NET environment. DICOM# partially rewrites dcm4che open source project in C#.
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iPath is providing an free and open plattform for "case based collaboration", especially designed for medical applications (telemedicine, etc). The iPath-Server package provides a sort of medical BBS to discuss/consult cases online. Additional modules
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DICOV
MATLAB-based Dicom converter and viewer
DICOV (Dicom COnVerter) is a MATLAB-based tool for converting Dicom files into Analyze format with SPM orientation. Also, it supports simple Dicom viewer. As it utilizes some functions in SPM8, SPM8 should be installed and its path should be included to MATLAB path. A 64bit environment with more than 8GB RAM is required for DICOV (MAC OSX is recommended.). Dicom is unified medical image format, but there're some variability across the imaging systems. DICOV is optimized for the Dicom files generated by GE PACS system. -
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Peptide Vaccine Analysis Tool (PVAT) is an optimization software that predicts the best possible peptide stretches in a given protein sequence based on two factors: 1. the surface exposure of the peptide stretches, and 2. their susceptibility to mutation.
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The Development System for Auditory Modelling (DSAM) is a computational library designed specifically for producing simulations of the auditory system. It brings together many established auditory models within a flexible programming platform.
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PyVE
PyVE is image analysis and visualization environment
PyVE is image analysis and Visualization Environment focused at clinical use. At the core of it there is a powerful viewer for displaying 3D datasets (MRI, PET, CT) based on VTK. It all comes precompiled allowing painless access to Python (2.x), the ITK toolkit for image analysis, numpy/scipy for numerical calculations, Qt and PyQt4 for the development Graphical User Interfaces. -
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GDL Editor
Computerized guideline editor for clinical decision support
...It is designed to be natural language- and reference terminology- agnostic by leveraging the designs of openEHR Reference Model and Archetype Model. The tool provides an editing and testing environment capable of generating forms based on the elements defined in the GDL. Requirements: Java Runtime Enviroment (JRE) 1.6 or higher -
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MRiLab
A Numerical MRI Simulation Platform
The MRiLab project is moving to GitHub, the latest version can be obtained from https://leoliuf.github.io/MRiLab/ The MRiLab is a numerical MRI simulation package. It has been developed and optimized to simulate MR signal formation, k-space acquisition and MR image reconstruction. MRiLab provides several dedicated toolboxes to analyze RF pulse, design MR sequence, configure multiple transmitting and receiving coils, investigate magnetic field related properties and evaluate real-time... -
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Gimias
Graphical Interface for Medical Image Analysis and Simulation
GIMIAS is a workflow-oriented environment for solving advanced biomedical image computing and individualized simulation problems, which is extensible through the development of problem-specific plug-ins. In addition, GIMIAS provides an open source framework for efficient development of research and clinical software prototypes integrating contributions from the Physiome community while allowing business-friendly technology transfer and commercial product development. -
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ds-Bidens
Software for studying bacterial colony features
...The software (ζ-Bidens) was programmed using C++, Perl and wxBasic programming languages. ζ-Bidens provides key tools for studying bacterial colony images as: texture analysis, invariant moment and color (CIELab) calculation, etc., simplifying operations previously carried out by MatLab applications. Additionally ζ-Bidens offers to the users a versatile environment for the study and identification of bacterial colonies -
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What is MedSquare about? Our aim is to create a powerful and flexible modular environment for exploration of medical images, for both medical and scientific purposes.
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Py3DN
Morphometric analysis and visualization of the 3D structure of neurons
...It allows the construction of mathematical representations of neuronal topology, visualization and a variety of morphometric analysis on the neuronal structures. Above all, it provides a flexible environment where new types of analyses can be easily set up allowing total freedom to test new hypotheses. The application was developed in Python and uses Blender (an open source program) to produce detailed 3D representations of raw and processed data. Py3DN is described in the paper: Aguiar P et al, "Versatile morphometric analysis and visualization of the three-dimensional structure of neurons", Neuroinformatics, 2013, 11(4):393-403 doi: 10.1007/s12021-013-9188-z -
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CanReg5 (moved to Github)
Canreg5 is a software package for population based cancer registries
...The main goal of the CanReg5 project is to provide a flexible and easy to use tool to accomplish these objectives. CanReg5 is a multi user, multi platform, open source tool to input, store, check and analyse cancer registry data. It has modules to do: data entry, quality control, consistency checks and basic analysis of the data It was designed with an emphasis on user friendliness, it has a modern user interface and is easy to navigate. Is available in several languages. (English, French, Spanish, Portuguese, Russian, Turkish, Georgian, and Chinese.) -
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Communication & Billing for Labs,Clinics
Powerful Communication, Billing & Campaign Management for Health Care
Lab Communicator is a simple yet powerful communication tool to communicate Lab reports to customers via SMS or Email, and publish reports online for Customer Access in Secured environment. Lab communicator can be used along with your existing software as a plug-in. If not, Report Communicator acts as a software to Manage Registrations, Manage Payments & Dues, Register Users, Print reports, Print bills, Communicate reports to users, check daily collection through printable report as other software does. When click on Lab Report PRINT, Report Communicator performs 3 activities at a time simultaneously : 1) Physical hard copy printout, 2) Communicate the reports details to users, 3) Provide the report Online in cloud. -
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The MeVisLab Community project provides add-on modules that extend the functionality of the MeVisLab software. The modules are provided and maintained by the MeVisLab developer community and can be compiled with the public MeVisLab SDK.
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Mediboard is a web based open source system to manage Healthcare structures. The system is a based on a web multi-layers architecture to manage various interconnected modules, using PHP, XML, XHTML, Javascript, CSS, Smarty and PEAR.
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This is a sophisticated & integrated simulation and analysis environment for dynamical systems models of physical systems (ODEs, DAEs, maps, and hybrid systems). It supports symbolic math, optimization, continuation, data analysis, biological apps...
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MD PnP | OpenICE
Open Source Integrated Clinical Environment
As of 2015-06-23, this project may now be found at http://www.github.com/mdpnp/mdpnp. A prototype reference implementation of the standard for the Integrated Clinical Environment (ASTM F2761-2009) -
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SCRalyze
A matlab environment for model-based psychophysiology
SCRalyze is a powerful tool for model-based analysis of psychophysiological signals, using linear convolution models and dynamic causal modelling. A flexible import interface and many utilities make this software a standalone tool. IMPORTANT: As of 04.11.2019, the official code repository for PsPM (formerly SCRalyze) has been moved to https://github.com/bachlab/PsPM . In order to check the latest releases, discussion and bug reports, please refer to our new repository. Although this... -
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DAT_Analyzer
striatal subregional analysis tool for dopamine transporter PET
DAT_Analyzer (DANA) is fully automated tool for analyzing dopamine transporter PET. DANA utilizes coregistration and spatial normalization functions in SPM8 and therefore requires MATLAB 7.1 (or higher) and SPM8 in 64bit environment with more than 8 GB RAM. MAC OSX OS is recommended. It includes various custom templates for conventional MR, DARTEL MR, two type of CT, and ligand specific PET and also includes various types of striatal subregional VOI templates. It supports five types of spatial normalization methods. (This project will be uploaded soon. It's now under construction.)
