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  • 1
    MatrixUser

    MatrixUser

    A Multi-functional GUI-based Program for Image Processing and Analysis

    The MatrixUser project is moving to GitHub, the latest version can be obtained from https://leoliuf.github.io/MatrixUser/ Most of the medical images (e.g. CT, MRI, PET, etc.) comprises multiple frames which represent slices, phases, timing etc. from the same imaging object. Those images can be saved as multidimensional matrices in Matlab thanks to Matlab's powerful support of multidimensional data representation.
    Downloads: 5 This Week
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  • 2
    The Striatal Subregional VOImap

    The Striatal Subregional VOImap

    Six striatal sub-regional volumes of interest to BP quantitation

    ...VOIs were manually drawn with software Analyze 9,0 (Mayo Clinic) in 18F-DOPA brain image after spatial normalization with a 18F-DOPA Template developed by our group (available at: https://www.nitrc.org/projects/spmtemplates). Each striatum was divided into 6 sub-regions: ventral caudate, anterior dorsal caudate, posterior dorsal caudate, ventral putamen, anterior dorsal putamen and posterior dorsal putamen, based on Mawlawi et al. (J Cereb Blood Flow Metab.2001;21:1034–57) and Oh et al. (J Nucl Med.2012;53:399–406) segmentation. ...
    Downloads: 0 This Week
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  • 3
    Body Fluid Cell Counter "Hemocytometer"

    Body Fluid Cell Counter "Hemocytometer"

    Body fluid cell counts are easy to calculate and follow with this App!

    Precision is very important when counting cells in body fluids such as spinal fluids. By using this software the lab tech will be better able to track which grid square they counted and to simply clear out one side to recount. Instead of having to hold on to the old mechanical ticker, which at times did not work correctly, the tech simply presses the space-bar to count.
    Downloads: 0 This Week
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  • 4
    Bika Open Source LIMS/LIS

    Bika Open Source LIMS/LIS

    Web based laboratory information management system

    A web-based LIMS (Laboratory Information Management System) · Built in Plone · Professionally supported · Making waves · bi:ka (Zulu): tell it as it is More information and links to manuals, user forums, support and translations are available at https://www.bikalims.org/support-and-service-provision Bika community: www.bikalims.org Main project sponsor, Bika Lab Systems: www.bikalabs.com Inquiries: lemoene@bikalabs.com
    Downloads: 0 This Week
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  • 5
    ...Code will remain here as an archive of processing methods that were applied to published data using PipeDream. If you are looking for data organization and pre-processing code, please see the new version of PipeDream on GitHub: https://github.com/cookpa/pipedream It is still very much a work in progress but has dicom2series, dicom2nii, nii2dt. If you are looking for a T1 processing pipeline, please see antsCorticalThickness.sh in the latest version of ANTs: https://github.com/stnava/ANTs The old PipeDream "antsbrainprocessing.sh" was a protoyype for antsCorticalThickness.sh.
    Downloads: 0 This Week
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  • 6
    HRVAS: HRV Analysis Software
    This project will be moving to GitHub. If you want to contribute or get the latest source go to: https://github.com/jramshur/HRVAS HRVAS is a heart rate variability (HRV) analysis tool developed using MATLAB. HRVAS can detrend and filter IBI and can perform time domain, frequency domain, time-frequency, Poincare', and nonlinear HRV analysis. If you use this application or modify this application for your research, please reference the thesis entitled "DESIGN, EVALUATION, AND APPLICAION OF HEART RATE VARIABILITY ANALYSIS SOFTWARE (HRVAS)". ...
    Downloads: 2 This Week
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  • 7
    OsiriX - moved to Github
    The project has moved to GitHub: https://github.com/pixmeo/osirix
    Downloads: 1 This Week
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  • 8

    niftilib

    ** MAIN SITE IS NOW: https://github.com/NIFTI-Imaging/nifti_clib **

    niftilib is a collection of i/o routines for the nifti1 neuroimage data format. C (nifticlib), Java (niftijlib), Matlab (niftimatlib), and Python (pynifti) code is available. For nifti format info see: http://nifti.nimh.nih.gov/
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    Downloads: 17 This Week
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  • 9
    ...It is a Java/JSF/Hibernate/Spring web application that is actively being developed and used at Harvard Medical School. Note: The Screensaver project has moved to GitHub at https://github.com/hmsiccbl/screensaver.
    Downloads: 0 This Week
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  • 10
    """ E-Cell's source code repository has moved to GitHub! https://github.com/ecell The development of E-Cell now continues on GitHub. The Subversion repository was abandoned. """ E-Cell System is an object-oriented software suite for modeling, simulation, and analysis of large scale complex systems such as biological cells. It allows many components driven by multiple algorithms with different timescales to coexist in a model.
    Downloads: 0 This Week
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  • 11
    MEDILIG - Medical Life-Guard

    MEDILIG - Medical Life-Guard

    EHR/EMR cross-platform electronic medical record application

    EHR/EMR cross-platform software for the design, implementation and use of autonomous, open, database models for multilingual medical knowledge management systems from primary care to continuing care.
    Downloads: 1 This Week
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  • 12
    Taverna 1.x (archived)

    Taverna 1.x (archived)

    Scientific workflow system

    Taverna is *no longer* hosted on SourceForge, but has moved to the Apache Software Foundation: https://taverna.apache.org These pages and mailing list archives are provided for *archival purposes* for older Taverna 1.x releases. See https://taverna.apache.org/download/ for the latest releases from Apache Taverna.
    Downloads: 0 This Week
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  • 13
    EXPR is a software package for the recording and analysis of animal behaviour. Recording is done by pressing particular keyboard keys on the computer. The software then saves the sequence and timing of behaviours. Note that the DOS (1995: https://sourceforge.net/projects/expr/files/expr/fb-port-expr-00-1995/EXPR-binary-DOS-0.0.1995.tar.gz/download) version is currently the only fully functional and is recommended for use. On modern computers, DOS software can run in DOSBOX (https://www.dosbox.com/).
    Downloads: 0 This Week
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  • 14

    ACAFE-clinical decision support EMR

    A computerised clinical decision support advancement for emergency med

    ...Hospital electronic medical record EHR or EMR. Used commercially. Other uses include research-development into chronic and infectious-diseases. Watch video here of demo https://www.youtube.com/watch?v=SGlicILHhJs
    Downloads: 0 This Week
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  • 15
    Stratos viewer is a web based utility to examine DICOM medical images through a web browser. This project is not active anymore. If you are interested in a Dicom web viewer, have a look at our new development: MedView [ https://github.com/jap1968/medview ]
    Downloads: 0 This Week
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  • 16
    NOTE: THIS PROJECT HAS MOVED TO GITHUB Link: https://github.com/hacklaen/virtualmri A realistic simulation of a MR scanner shall be developed. For the user it shall be possible to change all relevant setting of the virtual scanner and to adapt them to the expected pathology. Students and doctors in education are the target group.
    Downloads: 3 This Week
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  • 17
    Obsolete project - archived at https://github.com/darrenleeweber/bioelectromagnetism This is a public release of a Matlab toolbox for working with data from electroencephalography (EEG/ERP) and magnetic resonance imaging (MRI). It contains functions to process and visualize ERP/MRI data and associated electrode positions.
    Downloads: 0 This Week
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