Showing 8 open source projects for "data structure"

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  • 1

    Gait Analysis Graphical User Interface

    Extracts gait parameters from 120 fps video of mouse walking

    This project enables behavioral scoring of mouse gait using MATLAB. This was developed and used in the laboratory of Veronique VanderHorst, MD PhD at Beth Israel Deaconess/Harvard Medical School. First, a GUI displays videos of mice walking on a custom apparatus and enables the user to manually detect paw position. This data is saved. Additional functions take this spatiotemporal information and extract commonly used gait parameters, which are then exported to a MATLAB structure to be used...
    Downloads: 0 This Week
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  • 2

    PsyExTool

    psychophysical experiment control, data collection and visualization

    ... using keyboard or mouse. The process of experiment is displayed graphically. At the end of the session, the data can be stored or exported for further analysis. The structure of the program may incorporate and combine additional methods for data collection and stimuli presentation. The code is under MIT license. Comments and questions are welcome.
    Downloads: 0 This Week
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  • 3
    The Multivariate Regression Composer, a Matlab toolbox. It generates a regression model of the optimal structure. Uses the source data set, the initial models and the primitive functions.
    Downloads: 0 This Week
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  • 4
    Sensitizer

    Sensitizer

    A toolset to automate STOP analysis with Zemax OpticStudio

    .... The core data structure of SENSITIZER is an optical group, which can be any optical surface in the lens file or a set of subsequent surfaces. These groups will be perturbed by varying their positions relative to the rest of the system (rigid-body-motions) and/or by adding Zernike shape deformations on their front surface. After a certain perturbation is applied, ZOS runs (sequential) raytracing to compute the optical performance such as centroid displacement or wavefront error.
    Downloads: 3 This Week
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  • 5

    VeriSiMPL

    Verification via biSimulations of Max-Plus-Linear models

    This toolbox is used to generate finite abstractions of autonomous Max-Plus-Linear (MPL) systems over R^n. Abstractions are characterized as finite-state Labeled Transition Systems (LTS). The LTS finite abstractions are shown to either simulate or to bisimulate the original MPL system. LTS models are to be verified against given specifications expressed as formulae in Linear Temporal Logic (LTL) and Computation Tree Logic (CTL). The toolbox intends to leverage the NuSMV model checker. Models...
    Downloads: 0 This Week
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  • 6

    JAABA

    The Janelia Automated Animal Behavior Annotator

    The Janelia Automatic Animal Behavior Annotator (JAABA) is a machine learning-based system that enables researchers to automatically compute interpretable, quantitative statistics describing video of behaving animals. Through our system, users encode their intuition about the structure of behavior by labeling the behavior of the animal, e.g. walking, grooming, or following, in a small set of video frames. JAABA uses machine learning techniques to convert these manual labels into behavior...
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    Downloads: 2 This Week
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  • 7

    SPE Toolbox

    MatLab functions for reading WinView/WinSpec .spe files

    This toolbox is a collection of MatLab functions for reading WinView/WinSpec files (.spe extension) directly to MatLab. It provides functions for reading full header from file into a structure, reading frames into matrices, and reading pixel values across all frames. You can use these functions to analyse and process experiment data stored in .spe files in MatLab, and to write functions to export .spe files to animated GIFs for use in presentations. Also includes simple MatLab application...
    Downloads: 0 This Week
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  • 8

    Systems Glycobiology

    Glycosylation Network Analysis Toolbox (GNAT)

    ... features that are geared towards incorporating glycan-structure experimental data into the simulation environment. For information about GNAT installation and usage, please see the GettingStarted.pdf file enclosed in the package. To cite GNAT: [1] Gang Liu, Apurv Puri and Sriram Neelamegham, Glycosylation Network Analysis Toolbox (GNAT): a MATLAB based environment for systems glycobiology, Bioinformatics 2013 29: 404-406
    Downloads: 1 This Week
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