Search Results for "gnu/linux" - Page 12
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Showing 821 open source projects for "gnu/linux"
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UNLocBoX
UNLocBox (Matlab convex optimization toolbox)
The UNLocboX is a matlab convex optimization toolbox part of the UnlocX project. It is composed of the most used algorithms such as forward backward, Douglas-Rachford, admm or ppxa. Moreover a collection of proximal operators is available in order to implement problems very efficiently. -
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Waterloo
Java-based scientific graphics
Java-based scientific graphics with support for Java, Groovy, MATLAB, Python, the R statistical environment, Scala and SciLab. -
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TVMAT-Project
Projeto de viabilização de canal de TV utilizando o MatLab.
Aplicativo para auxílio na elaboração de projetos de viabilização de canais de TV. Baseado na regulamentação nº284 de 7 de dezembro de 2001. Aplicação desenvolvida em MatLab. Utiliza o método da interpolação para estimar os valores das curvas de intensidade de campo, utilizadas nos cálculos. Aplicação destinada a estudantes do curso de engenharia de telecomunicações. -
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cbsPlot
A Matlab standalone application for Coherent Back Scattering analysis
This software will be extremely useful for researchers involved in the analysis of data in coherent back scattering experiments to characterize optical media such as random structures, light harvesting materials and random laser media. Specific features in this program enables easy, fast and reliable evaluation of the mean free path of light in random media along with error estimation. The program incorporates manual as well as automatic noise removal functionality. -
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RAFTS3
Rapid Alignment Free Tool for Sequences Similarity Search
RAFTS3 can perform high-speed protein search comparisons locally using a desktop computer or laptop. RAFTS3 performed searches many times faster than those with BLASTp against large protein databases such as NR and Pfam, with a small loss of sensitivity depending on the similarity degree of the sequences. RAFTS3 is a new alternative for fast comparison of protein sequences, genome annotation and biological data mining. Preprint: http://dx.doi.org/10.1101/055269 Precomputed databases... -
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Netvlad
NetVLAD: CNN architecture for weakly supervised place recognition
NetVLAD is a deep learning-based image descriptor framework developed by Relja Arandjelović for place recognition and image retrieval. It extends standard CNNs with a trainable VLAD (Vector of Locally Aggregated Descriptors) layer to create compact, robust global descriptors from image features. This implementation includes training code and pretrained models using the Pittsburgh and Tokyo datasets. -
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SILA
Automated bacterial and archaeal genome annotation system
SILA is a system for automated annotation of bacterial and archaeal genomes. It provides accurate gene prediction using a combination of tools (Prodigal and HGF) and a web site for task management and visualization of annotation. This project is in alpha stage. Please use the online service available at: http://www.bioinfo.ufpr.br/SILA/login.jsp Documentation (portuguese only): http://hdl.handle.net/1884/34801 -
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MetaOpen
Metabolomics Bioinformatics Tools
Our bioanalytical research exploits practical and efficient high-throughput technologies for the analyses of complex mixtures derived from living systems. This will facilitate the development of preventive, predictive and personalized medicine for specific diseases and will promote health and wellness. We use a number of high-throughput analytical platforms including multidimensional liquid chromatography-mass spectrometry (MDLC-MS) for proteomics, and for metabolomics; liquid... -
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riboshape
Predicting ribosome footprint profile shapes from transcript sequences
Riboshape is a suite of algorithms to predict ribosome footprint profile shapes from transcript sequences. It applies kernel smoothing to codon sequences to build predictive features, and uses these features to builds a sparse regression model to predict the ribosome footprint profile shapes. Reference: Liu, T.-Y. and Song, Y.S. Prediction of ribosome footprint profile shapes from transcript sequences. Proceedings of ISMB 2016, Bioinformatics, Vol. 32 No. 12 (2016) i183-i191. -
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llis-isd
LLIS-ISD - local linear interpolate scale.
Project: LLIS-ISD - local linear interpolate scale. Base project: ISD - image scale duplicate. -
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ARIA
Retinal vessel detection using MATLAB
NOTE: This project is now hosted at GitHub. Please follow the link below to visit its new home. -
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Cascaded Layering for MFL
Implementation of Cascaded layering framework for Mixed Feedback Loop
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BPL
Bayesian Program Learning model for one-shot learning
BPL (Bayesian Program Learning) is a MATLAB implementation of the Bayesian Program Learning framework for one-shot concept learning (especially on handwritten characters). The approach treats each concept (e.g. a character) as being generated by a probabilistic program (motor primitives, strokes, spatial relationships), and inference proceeds by fitting those generative programs to a single example, generalizing to new examples, and generating new exemplars. The repository contains code for... -
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A MATLAB Toolbox for control and basic analysis of behavioral experiments.
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Yet Another Audio Feature Extractor is a toolbox for audio analysis. Easy to use and efficient at extracting a large number of audio features simultaneously. WAV and MP3 files supported, or embedding in C++, Python or Matlab applications.
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DeepLearnToolbox
Matlab/Octave toolbox for deep learning
DeepLearnToolbox is a MATLAB / Octave toolbox for prototyping deep learning models. It provides implementations of feedforward neural networks, convolutional neural networks (CNNs), deep belief networks (DBNs), stacked autoencoders, convolutional autoencoders, and more. The toolbox includes example scripts for each method, enabling users to quickly experiment with architectures, training, and inference workflows. Although it's been flagged as deprecated and no longer actively maintained, it... -
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MORPHE
MORphological PHenotype Extraction
MORphological PHenotype Extraction (MORPHE) is a suite of automated image processing, visualization, and classification algorithms to facilitate the analysis of heritable and clonal red-to-green transitions that occurred during the growth of a colony. -
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FieldTrip
The MATLAB software toolbox for MEG and EEG analysis
FieldTrip is the Matlab toolbox for EEG and MEG data. It includes algorithms for simple and advanced analysis, such as importing, preprocessing, time-frequency analysis, source reconstruction, statistical testing and connectivity analysis. -
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SPIW - Scanning Probe Image Wizard
Scanning Probe Image Wizard - MATLAB Toolbox
SPIW is a MATLAB toolbox, for automated processing of scanning probe microscope images. Tools are applicable to all SPM images, but the main focus is on images with atomic or molecular resolution. SPIW is primarily a MATLAB toolbox with functions designed to be called in a user's own script. SPIW also has a very basic GUI for browsing and exporting images. For information on SPIW's performance see our publication ( http://dx.doi.org/10.1063/1.4827076 ) in the Review of Scientific... -
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Folder
Toolbox for modelling deformation in layered media in 2D
Folder is a tool to simulate and analyse the development of structures in mechanically layered media during layer parallel shortening or extension. It includes a graphical user interface that allows for easy designing of complex geometrical models, defining material parameters (including linear and non-linear rheology), and specifying type and amount of deformation. It also includes a range of features that facilitate the visualization and examination of various relevant quantities e.g.... -
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OpenSegSPIM
OpenSegSPIM
OpenSegSPIM -
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MATAA (Mat's Audio Analyzer) is a flexible and versatile audio analysis system based on Matlab or GNU Octave. MATAA was removed from SourceForge. Please visit https://github.com/mbrennwa/mataa for further information.
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GI-ICA
Matlab implementation of GI-ICA and PEGI
This is a matlab implementation of the GI-ICA algorithm for ICA in the presence of an additive Gaussian noise. The algorithm is discussed in the paper "Fast Algorithms for Gaussian Noise Invariant Independent Component Analysis" by James Voss, Luis Rademacher, and Mikhail Belkin. -
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KMBOX - Kernel Methods Toolbox
A collection of kernel-based algorithms for Matlab.
KMBOX is a collection of MATLAB programs that implement kernel-based algorithms, with a focus on regression algorithms and online algorithms. It can be used for nonlinear signal processing and machine learning.
