Showing 27 open source projects for "static code analysis"

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  • 1
    Napkin

    Napkin

    An Infinitely Large Napkin

    Napkin (also titled “An Infinitely Large Napkin”) is a lightweight, semi-formal introduction to higher mathematics, aimed at giving readers a bird’s-eye view over various mathematical fields. It is not a polished textbook full of full proofs; rather it offers clean definitions, theorem statements, intuitive motivations, and informal sketches of why things work, with the goal of building conceptual understanding. The coverage spans undergraduate and early graduate topics, designed to show how...
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  • 2
    Gonum

    Gonum

    Set of numeric libraries for the Go programming language

    ...Gonum contains libraries for matrices and linear algebra; statistics, probability distributions, and sampling; tools for function differentiation, integration, and optimization; network creation and analysis; and more. We encourage you to get started with Go and Gonum if you are tired of sluggish performance, and fighting C and vectorization, and also if you are struggling with managing programs as they grow larger. Get Gonum if you want code to be fully transparent, and want the ability to read the source code you use. It is useful if you’d like a compiler to catch mistakes early, but hate fighting linker and unintelligible compile errors.
    Downloads: 1 This Week
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  • 3
    MCM-ICM

    MCM-ICM

    Mathematical Contest resources

    ...The contents skew toward MATLAB and LaTeX, reflecting the tools most winning teams use to build models and typeset their reports; you’ll typically see complete write-ups alongside code that implements optimization, simulation, statistical analysis, or other modeling pipelines.
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  • 4
    The continuous medial representation is a method for object representation and shape analysis. Hosted on Sourceforge are the source code for routines that fit medial models to anatomical objects.
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  • 5

    MAGeCK

    Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout

    Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent genome-scale CRISPR-Cas9 knockout screens technology. For instructions and documentations, please refer to the wiki page. MAGeCK is developed by Wei Li and Han Xu from Dr. Xiaole Shirley Liu's lab at Dana-Farber Cancer Institute/Harvard School of Public Health, and is maintained by Wei Li lab at Children's National Medical Center. We thank the support...
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    Downloads: 66 This Week
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  • 6

    lpsolve

    Mixed Integer Linear Programming (MILP) solver.

    Mixed Integer Linear Programming (MILP) solver lp_solve solves pure linear, (mixed) integer/binary, semi-cont and special ordered sets (SOS) models.lp_solve is written in ANSI C and can be compiled on many different platforms like Linux and WINDOWS This project is moved to github: https://lp-solve.github.io/
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    Downloads: 2,309 This Week
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  • 7
    A Matlab software routine to perform Principal Component Analysis using Covariance, Correlation or Comedian as the criterion. Though, initially developed for experiments related to fretting wear but can be effectively used to interpret experimental data from any field. The attached files contain source code as well as a sample MATLAB (.mat) data file of 13 variables. It could be replaced to the data file of your choice.
    Downloads: 0 This Week
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  • 8

    DEAPathways

    Differential Expression Analysis for Pathways

    This project contains the source code associated with the PLoS Computational Biology publication: "Differential Expression Analysis for Pathways". The paper text can be found here: http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002967
    Downloads: 0 This Week
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  • 9

    wmtsa-python

    Discrete wavelet methods for time series analysis using python

    Several python libraries implement discrete wavelet transforms. However, none of them, or at least none that I know, is aimed at scientific use. This library aims at filling this gap, in particular considering discrete wavelet transform as described by Percival and Walden. This module started as translation of the wmtsa Matlab toolbox (http://www.atmos.washington.edu/~wmtsa/), so most naming conventions and most of the code structure follows their choices. The code uses a mix of python and...
    Downloads: 1 This Week
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  • 10
    A collection of code, bundled into a single R package, to perform several aspects of data management, image pre-processing, data analysis and statistical inference related to the quantitative analysis of dynamic contrast-enhanced MRI (DCE-MRI).
    Downloads: 0 This Week
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  • 11

    TIDES

    Taylor series Integrator for Differential Equations

    Taylor series Integrator for Differential EquationS. This software is developed by Profs. A. Abad, R. Barrio, F. Blesa and M. Rodriguez, (GME, University of Zaragoza, Spain). It consists on a C (Fortran) library, libTIDES, and a Mathematica package, MathTIDES. (MathTIDES requires Mathematica version >= 7.0) . Basic references: * A. Abad, R. Barrio, F. Blesa, M. Rodriguez, 2012. Algorithm 924: TIDES, a Taylor series Integrator for Differential EquationS, ACM TOMS. 39, no. 1, art. 5....
    Downloads: 3 This Week
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  • 12

    JCycles

    [frozen] A library for computing cycles in graphs or in Java code.

    [This project is frozen, but has an offspring with more features: https://github.com/jeffhain/jadecy ] JCycles provides treatments to compute cycles, or just strongly connected components, in directed graphs in general, or in classes or packages dependencies graphs parsed from class files (major version <= 51, else does best effort). It uses Tarjan's algorithm for SCCs, and Johnson's for cycles, with continuations instead of recursion, which allows to handle large graphs (<...
    Downloads: 0 This Week
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  • 13
    NSB entropy and mutual information estimator; applications to the analysis of neural code.
    Downloads: 0 This Week
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  • 14
    The fast2armc program translates source code of a counter automata model for FAST(er) tool to the ARMC prolog syntax.
    Downloads: 0 This Week
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  • 15
    ShiVaSmiles

    ShiVaSmiles

    A slick interface to see various scale analysis algorithms in action.

    ...The main website is built as a wiki gathering info and examples on the various implemented algorithms. The combination of the application and its wiki intend to constitute a nice little pedagogic toolkit for multiscale analysis. Feel free to contribute code or wiki content !
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  • 16
    A program for exploring complex functions, much like the now out-dated f(z). Domain colored plots of complex functions. Click evaluate. Uses reflection so you can code almost anything for your formula. All java. Please help.
    Downloads: 1 This Week
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  • 17
    The final build of this software now is distributed in R, embedded in "RedeR': an R/Bioconductor package for hierarchical and nested network analysis... more about RedeR: http://bioconductor.org/packages/2.9/bioc/html/RedeR.html
    Downloads: 0 This Week
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  • 18
    LSGTL means LLX’s Static Graph Template Library which is a light-weighted header-only template library developed mainly for static graph analysis. LSGTL is expected to be used in laboratories for research purposes mostly.
    Downloads: 0 This Week
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  • 19
    Source code for the paper J. Keiner and B. Waterhouse. Fast Principal Components Analysis method for finance problems with unequal time steps. In P. L'Ecuyer and A. B. Owen, editors, Monte Carlo and Quasi-Monte Carlo Methods 2008, Springer Verlag, 2010
    Downloads: 0 This Week
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  • 20
    An implementation of the Markovian Jensen Shannon divergence (MJSD). The code recursively segments a sequence of symbols and then assesses the divergence of each segment with respect to the entire sequence.
    Downloads: 0 This Week
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  • 21
    R2HTML is a package for R, which includes HTML function and methods to output R objects to HTML. Allow for redirection on the fly. A driver for Sweave allows to parse HTML flat files containing R code and to automatically write the corresponding outputs.
    Downloads: 0 This Week
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  • 22
    Moved to Google Code, see http://code.google.com/p/pythonequations/downloads/list
    Downloads: 0 This Week
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  • 23
    SPHear is a coupled smoothed particle hydrodynamics (SPH), finite element (FE) fluid-solid interaction analysis code for dynamic problems.
    Downloads: 0 This Week
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  • 24
    A code for fast multi-dimensional density estimation . Instead of assuming an a-priori metric definition, it calculates a locally adaptive metric for each data point by using, a Shannon Entropy based, binary space partitioning scheme.
    Downloads: 16 This Week
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  • 25
    METIL is a python-like interpreted or compiled language made for speed and generic programming, as in C++ but with static symbolic computations, type propagation, "for" surdefinition. Object orientation is centered on properties, rather than hierarchy.
    Downloads: 0 This Week
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