Showing 280 open source projects for "python-4suite-xml"

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  • 1

    MAGeCK

    Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout

    MAGeCK2 is here: https://github.com/davidliwei/mageck2 Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent genome-scale CRISPR-Cas9 knockout screens technology. For instructions and documentations, please refer to the wiki page. MAGeCK is developed by Wei Li and Han Xu from Dr. Xiaole Shirley Liu's lab at Dana-Farber Cancer Institute/Harvard School of Public Health, and is maintained by Wei Li lab at...
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    Downloads: 154 This Week
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  • 2
    Python/FEniCS Examples

    Python/FEniCS Examples

    phase-field simulation and other examples with Python/FEniCS

    The main goal of this project was developing phase-field simulations of lithium dendrite growth with FEniCS programmed in Python. The problem was based in the grand potential-based model of Zijian Hong and Venkatasubramanian Viswanathan (https://doi.org/10.1021/acsenergylett.8b01009) . Some simpler examples were developed before for a first approach with FEniCS: heat equation and combustion model.
    Downloads: 1 This Week
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  • 3
    Lenia

    Lenia

    Lenia - Mathematical Life Forms

    Lenia is a 2D cellular automaton with continuous space, time, and states. It produces a huge variety of interesting life forms. There are various versions available. Python, Matlab, and web (JavaScript) versions are real-time, interactive, and equipped with statistics tools. Jupyter and R versions are non-interactive and just for demonstration purposes.
    Downloads: 5 This Week
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  • 4
    Gato (Graph Animation Toolbox): Animate graph algorithms for example for computing shortest paths, minimal spanning trees, maximum flows or maximal cardinality or weight matchings. Create your own animations using the Animated Data Structures (ADS).
    Downloads: 0 This Week
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  • 5
    This project will be a project that will be used by Speleologist (cavers) to help aid in the mapping of the underground world. It will be simple at first.. only allowing the entry of survey (dist/azmith/V-angle) and give back a line plot..
    Downloads: 0 This Week
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  • 6
    The new version of MinimPy (MinimPy2) is available for download at: https://osdn.net/dl/minimpy2/MinimPy2.zip Please send your feedback about this new version to mahmood.saghaei@gmail.com (include MinimPy2 in the subject) ============================================================ MinimPy is a desktop application program for sequential allocation of subjects to treatment groups in clinical trials by using the method of minimization. Comprehensive reference help is available at...
    Downloads: 17 This Week
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  • 7
    Tux Math Scrabble

    Tux Math Scrabble

    12÷16×3=9÷4

    Latest version 0.9.1 runs on Python3. Date: June 15, 2023 Online/touch-screen version: https://www.asymptopia.com/tuxmathscrabble/ Encourages kids to construct compound equations and consider multiple abstract possibilities.
    Downloads: 4 This Week
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  • 8
    APBS

    APBS

    Biomolecular electrostatics software

    This software has moved to http://www.poissonboltzmann.org/.
    Downloads: 0 This Week
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  • 9
    Ganja.js

    Ganja.js

    Javascript Geometric Algebra Generator for Javascript, c++

    ...Technically, ganja.js is a code generator producing classes that reificate algebraic literals and expressions by using reflection, a built-in tokenizer and a simple AST translator to rewrite functions containing algebraic constructs to their procedural counterparts. ganja.js now has a nodejs based templated source generator that allows the creation of arbitrary algebras for C++, C#, python and rust. The generated code provides in a flat multivector format and operator overloading.
    Downloads: 1 This Week
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  • 10
    CasADi
    A symbolic framework for C++, Python and Octave implementing automatic differentiation by source code transformation in forward and reverse modes on sparse matrix-valued computational graphs.
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    Downloads: 5 This Week
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  • 11
    Software for exploring & solving polyform puzzles, written in Python. Includes solvers for: pentominoes/polyominoes, solid pentominoes, Soma cubes, polycubes, polyiamonds, polyhexes, polysticks, and more to come.
    Downloads: 1 This Week
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  • 12
    newLISP for BSDs, LINUX, MacOS X, SunOS and Win32: small, fast 350+ functions, a -C-, MySQL, PostgreSQL, SQLite, ODBC, TCP/IP, UDP, XML, Java interface, string processing, regular expressions , math, financial, statistical functions, Win32 DLL
    Downloads: 40 This Week
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  • 13
    A Python interface to the GSL library. The wrapper covers nearly everything GSL provides.
    Downloads: 4 This Week
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  • 14
    Awesome Math

    Awesome Math

    This is the Curriculum for "How to Learn Mathematics Fast"

    This repository is a curated roadmap for learning the core mathematics used in computer science, machine learning, and data science without getting lost in unnecessary detours. It organizes topics like algebra, calculus, linear algebra, probability, and statistics into a pragmatic sequence that favors intuition and problem-solving over purely formal proofs. The materials emphasize short, high-leverage resources—video lectures, concise notes, and hands-on exercises—that help you build...
    Downloads: 0 This Week
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  • 15
    PaCal
    ProbAbilistic CALculator - a package for computing with probability distributions
    Downloads: 20 This Week
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  • 16
    zCharter
    Charting tools, backtesting tools, and data visualization tools for the most popular cryptocurrencies.
    Downloads: 0 This Week
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  • 17

    brl2mml

    A library to convert between braille and MathML

    **NOTE**: This project has been moved to https://github.com/timothytylee/brl2mml brl2mml is a library that can perform conversion between braille and MathML. It currently supports UK Maths braille.
    Downloads: 0 This Week
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  • 18

    Pi-Trav

    An interactive pi walk.

    A simulation and visualization of random walks based on the digits pi. This program also has a settings menu.
    Downloads: 0 This Week
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  • 19
    NGSolve is a general purpose Finite Element Library on top of Netgen. With the basic library one can solve heat flow equations, Maxwell equations, and solid mechanical problems. Several add-ons are available for particular application classes. New paper: J. Schöberl: "C++11 Implementation of Finite Elements in NGSolve", ASC Report 30/2014, Institute for Analysis and Scientific Computing, Vienna University of Technology,...
    Downloads: 0 This Week
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  • 20

    Simple Python Fixed-Point Module

    Pure-python binary fixed-point arithmetic library

    This Python module provides basic facilities for mathematics on fixed-point numbers. The number of fractional binary digits is tunable, allowing near-arbitrary precision arithmetic. Arithmetic & functions such as sqrt, exp, log, sin & cos are available. For the latest releases please visit https://github.com/rwpenney/spfpm
    Downloads: 0 This Week
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  • 21
    DimensionalAnalysis

    DimensionalAnalysis

    Performs dimensional analysis from cells in a spreadsheet.

    ...Use the names in the formulas, not the cell addresses. To use the Dimension Analysis tool, select and copy the cells, then paste them into the tool’s input text box. Requires Python 3 plus SymPy and mpmath packages. http://www.sympy.org http://mpmath.org/
    Downloads: 0 This Week
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  • 22
    Geophar

    Geophar

    Le couteau suisse du prof de maths

    Calculatrice graphique avancée en français, destinée aux professeurs ou aux étudiants du collège et du lycée. Elle permet de faire du calcul approché, de tracer des courbes et des figures géométriques exportables en png, eps, pdf ou svg. Linux, Windows, Mac. Elle contient également un outil pour générer très facilement des tableaux de variations et de signes en LaTeX.
    Downloads: 10 This Week
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  • 23

    minepy

    Maximal Information-based Nonparametric Exploration

    The minepy homepage has moved to http://minepy.readthedocs.io. The download page is now at https://github.com/minepy/minepy/releases.
    Downloads: 4 This Week
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  • 24
    yacas

    yacas

    Computer calculations made easy

    NOTE: Yacas and yagy development has moved to github. The new repositories are located at https://github.com/grzegorzmazur/yacas and https://github.com/grzegorzmazur/yagy . The mailing list has been moved over to https://groups.google.com/forum/#!forum/yacas . The downloads section at sourceforge will be kept up to date for the foreseable future. Yacas is an easy to use, general purpose computer algebra system. It uses its own programming language designed for symbolic as well as...
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    Downloads: 16 This Week
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  • 25
    Modular toolkit for Data Processing MDP
    The Modular toolkit for Data Processing (MDP) is a Python data processing framework. From the user's perspective, MDP is a collection of supervised and unsupervised learning algorithms and other data processing units that can be combined into data processing sequences and more complex feed-forward network architectures. From the scientific developer's perspective, MDP is a modular framework, which can easily be expanded.
    Downloads: 2 This Week
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