Search Results for "medical"
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Showing 41 open source projects for "medical"
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CGAL
The Computational Geometry Algorithms Library
CGAL or the Computational Geometry Algorithms Library is a C++ library that gives you easy access to a myriad of efficient and reliable geometric algorithms. These algorithms are useful in a wide range of applications, including computer aided design, robotics, molecular biology, medical imaging, geographic information systems and more. CGAL features a great range of data structures and algorithms, including Voronoi diagrams, cell complexes and polyhedra, triangulations, arrangements of curves, surface and volume mesh generation, spatial searching, alpha shapes, geometry processing, and many more. The use of these result in beautiful, visually complex and accurate representations. -
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The continuous medial representation is a method for object representation and shape analysis. Hosted on Sourceforge are the source code for routines that fit medial models to anatomical objects.
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R packages (maintained by YJLEE)
R packages for PK/PD modeling , BE/BA, drug stability, ivivc, etc.
These R packages are developed for data analysis of PK/PD modeling & simulation, bioequivalence/bioavailability (BE/BA), drug stability, in-vitro and in-vivo correlation (ivivc), as well as therapeutic drug monitoring (TDM). -
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SPINA
Structure parameter inference approach for endocrine feedback control
SPINA is software for the rapid, reliable and accurate determination of constant structure parameters of endocrine feedback control systems. It is a class of static function tests that require nothing more than steady-state concentrations of hormones or metabolites obtained in vivo. The first version of this cybernetic approach had been developed for the evaluation of the functional status of the thyroid gland, i.e. thyroid's secretory capacity (gain of thyroid, GT or SPINA-GT) and sum... -
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Criterial
The package for statistical data analysis and applied mathematics
...The project is built on the refined expertise and core concepts of the AtteStat and StatAnt projects. Completely free. No donations required. Comes with absolutely no warranty. Rating: Everyone (All ages). MEDICAL DISCLAIMER: This software is not certified for use in healthcare and should not be used for diagnostic or treatment purposes. NOTICE FOR EU RESIDENTS: This software is NOT compliant with EU regulations, including GDPR and the AI Act. It is not intended for use within the European Union. By downloading this software, you acknowledge that you do so at your own risk and waive any rights provided by EU consumer protection laws. ... -
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StatAnt
The package for statistical data analysis
...StatAnt is a standalone cross-platform application for statistical data analysis. Completely free. No donations required. Comes with absolutely no warranty. Rating: Everyone (All ages). MEDICAL DISCLAIMER: This software is not certified for use in healthcare and should not be used for diagnostic or treatment purposes. NOTICE FOR EU RESIDENTS: This software is NOT compliant with EU regulations, including GDPR and the AI Act. It is not intended for use within the European Union. By downloading this software, you acknowledge that you do so at your own risk and waive any rights provided by EU consumer protection laws. ... -
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MAGeCK
Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout
...MAGeCK is developed by Wei Li and Han Xu from Dr. Xiaole Shirley Liu's lab at Dana-Farber Cancer Institute/Harvard School of Public Health, and is maintained by Wei Li lab at Children's National Medical Center. We thank the support from Claudia Adams Barr Program in Innovative Basic Cancer Research and NIH/NHGRI to develop MAGeCK. -
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The new version of MinimPy (MinimPy2) is available for download at: https://osdn.net/dl/minimpy2/MinimPy2.zip Please send your feedback about this new version to mahmood.saghaei@gmail.com (include MinimPy2 in the subject) ============================================================ MinimPy is a desktop application program for sequential allocation of subjects to treatment groups in clinical trials by using the method of minimization. Comprehensive reference help is available at...
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QMinim
A web-based minimisation service
Based on MinimPy (http://sourceforge.net/projects/minimpy/), QMinim is a web-based minimization application, for allocation of subject to different arms of a clinical trial. It is an alternative to randomization, with the advantage of balancing arms of trial with respect to preselected prognostic factors. All aspects of minimization procedure including treatments, factors, minimization protocole, and including a preload can be customized using QMinim. -
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fcGENE: Genotype format converter
Format converting tool for genotype Data (e.g.PLINK-MACH,MACH-PLINK)
Main application is twofold: first to convert genotype SNP data into formats of different imputation tools like PLINK MACH, IMPUTE, BEAGLE and BIMBBAM, second to transform imputed data into different file formats like PLINK, HAPLOVIEW, EIGENSOFT and SNPTEST. Readable file formats: plink-pedigree (ped and map), plink-raw, plink-dosage, mach , minimac, impute, snptest, beagle and bimbam. Similarly all kinds of imputation of outputs are also accepted. Formats which can be generated by... -
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This is a sophisticated & integrated simulation and analysis environment for dynamical systems models of physical systems (ODEs, DAEs, maps, and hybrid systems). It supports symbolic math, optimization, continuation, data analysis, biological apps...
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A collection of code, bundled into a single R package, to perform several aspects of data management, image pre-processing, data analysis and statistical inference related to the quantitative analysis of dynamic contrast-enhanced MRI (DCE-MRI).
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PhEq_bootstrap
FDA's f2 computation with bootstrap technique
This program was developed as a help in establishing pharmaceutical equivalence by use of FDA f2 coefficient. It was designed to help with f2 computation in cases when intra- and inter-batch variability is large, namely RSD>10%. The use of statistical bootstrap technique allows to implement confidence interval (CI) into the f2 coefficients resulting in overcoming of their major drawback in the original metrics. The algorithm provides possible “worst case scenario” of f2 values, thus... -
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DeDAY
MLE survival analysis: Gompertz, Weibull, Logistic and mixed morality.
DeDAY (Demography Data Analyses) is a tool of analyzing demography data. It supports Gompertz, Weibull and Logistic distributions. DeDay also supports mixed mortality models based on these distribution such as the Gompertz-Makeham distribution. Distributions such as Gompertz describes only age-dependent mortality, which increases over time. Mixed mortality models, such as in Gompertz-Makeham distribution, consider a more general case where mortality is consist of both age-dependent and... -
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Parallel HRRT Deconvolution is a multithreaded ImageJ plugin for motion correction of PET brain images.
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r2web
Software for medical statistics based on R
The open source software R enables a large number of statistical analyzes. The software R2web allows to use those R functions that are useful for medical students, with a web interface that facilitates the work of the student (it replaces line commands in R with checkboxes, radio buttons, etc. ). Un logiciel en ligne pour les statistiques pour la médecine, basé sur R. Le logiciel open source R permet de faire un grand nombre d'analyses statistiques. Avec R2web, seules les fonctions R utiles aux étudiants en médecine sont présentes, dans une version web avec une interface qui facilite le travail de l'étudiant (en remplaçant les lignes de commande sous R par des cases à cocher, des boutons radio, etc). -
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PopED (Population Experimental Design) is a software tool for computing optimal experimental designs. The software has been developed with an emphasis on drug trials based on population models (non-linear mixed effects models).
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RVASSOC is a simple program for performing various tests for association between genotypes and disease status using sequence variants from unrelated cases and controls. It was designed to accommodate both rare variants and missing genotypes.
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MASyV (Multi-Agent System Visualization) enables one to write agent-based models/cellular automata, eg. in C, visualize them in real time & capture to movie file with MASyVs GUI & message passing lib. Includes examples: Hello World, ants, viral infection
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KinetDS is a software for curve fitting particularly designed for kinetic (mechanistic and empirical) description of a substance dissolution from solid state. It was primarily designed for handling pharmaceutical dissolution tests
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OpenCell is a user interface for working with CellML models. Features: * Integrate models made up of ODEs. * Supports CellML 1.0 and 1.1, allowing you to build complex models using imports. * Plot and edit graphs. * And more ...
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The Biopsychology Nonlinear Toolbox is a MATLAB toolbox that combines established analysis routines in one easy to use graphical user interface.
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This software is a tool for measurement kyphosis, lordosis and scoliosis. LoB Analytics was developed in Python.
