Search Results for "simulations"

...This tool computes for a given SNP site frequency spectrum some standard test statistics like Tajima's D, Fay & Wu's H, etc. Additionally, the user may adapt the tests to specific demographies by specifying non-standard first and secondary moments. These can be obtained e.g. from simulations.

It is an open source scientific library that is focused on multi-agent simulations on graphs. It prepares basic toolkit for agents, models, timers, graphs, nodes and edges. It is also accompanied with tools for data processing.

NOMAD is a C++ code that implements the MADS algorithm (Mesh Adaptive Direct Search) for difficult blackbox optimization problems. Such problems occur when the functions to optimize are costly computer simulations with no derivatives.

...BioFVM was first published in: A. Ghaffarizadeh, S.H. Friedman, and P. Macklin. BioFVM: an efficient, parallelized diffusive transport solver for 3-D biological simulations. Bioinformatics 32(8): 1156-8, 2016. DOI: 10.1093/bioinformatics/btv730 method paper: http://dx.doi.org/10.1093/bioinformatics/btv730

...The parameters are checked for significance, to avoid an overestimation. Based on two classical hypothesis testing, EDMFit provides a reliable outlier detection. For uncertainties budgeting, EDMFit makes use of Monte-Carlo simulations and supports different distribution function: - Uniform distribution, - Triangular distribution and - Gaussian (normal) distribution. For refractive index determination, the application supports the following models: - Barrel and Sears (1939), - Edlen (1953, 1966), - Owens (1967), - IAG (1999) and - Ciddor (1996, 2002). ...

Quantum walk library is set of tools for simulations of quantum walks (for chiral or achiral particles) on graphs based on Zarja library.

ASEP simulation library is specialized for simulations of Asymmetric Simple Exclusion Processes (ASEP) and its mutations like SSEP or TASEP based on a graph. It is consisted of agents, models, timers and graphs that forms united modelling enviroment ready for computer cluster use - all based on Zarja library.

using various methods to approximate objects interact under forces such as gravity

The aim of this project is to produce a software that will content two modules : - the first one will allow to conduct simulations of social behavior, - the second one will be able to produce philosophical considerations. The version version will be i

TAROT is a easy-to-use framework for Monte Carlo simulations in python. Calculations between different kinds of randomly distributed numbers are made as easy as basic arithmetics. Tarot provides an interactive graphical interface for interpretation.

The Kinship Algebra Modeller is a suite of java applications that assist development of an algebra to describe a given kinship terminology, and to support models and simulations of social processes based on relating people using this algebra.

Webfem is a JAVA/XML Web application for numerical (FEM) simulations. The Web architecture allows sharing on cluster of computers and grid computing. The Obj. Oriented design allows the users to add new elements,shape functions,partial differ. equations

ĄHola!, for "Hordes of Little Atoms," is a project to develop a lean, modular, scalable toolkit for massive simulations of particle (molecular) dynamics. It is written in C and Python to get the best balance between programmer and run time.