Search Results for "database tool"

Sacred is a tool to help you configure, organize, log and reproduce experiments. It is designed to do all the tedious overhead work that you need to do around your actual experiment. A very convenient way of the local variables in a function to define the parameters your experiment uses. You can access all parameters of your configuration from every function. They are automatically injected by name. You get a powerful command-line interface for each experiment that you can use to change...

GNAT is a BioNLP/text mining tool to recognize and identify gene/protein names in natural language text. It will detect mentions of genes in text, such as PubMed/Medline abstracts, and disambiguate them to remove false positives and map them to the correct entry in the NCBI Entrez Gene database by gene ID. March 2017: We started to upload GNAT output on Medline.

This is a GUI application for learning non disjoint groups based on Weka machine learning framework. It offers a variety of learning methods, based on k-means, able to produce overlapping clusters. The application also contains an evaluation framework that calculates several external validation measures. The application offers a visualization tool to discover overlapping groups.