Search Results for "visualization"
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Showing 30 open source projects for "visualization"
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1
Scanpy
Single-cell analysis in Python
Scanpy is a scalable toolkit for analyzing single-cell gene expression data built jointly with anndata. It includes preprocessing, visualization, clustering, trajectory inference and differential expression testing. The Python-based implementation efficiently deals with datasets of more than one million cells. -
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UMAP
Uniform Manifold Approximation and Projection
...This includes very high dimensional sparse datasets. UMAP has successfully been used directly on data with over a million dimensions. Second, UMAP scales well in the embedding dimension—it isn't just for visualization. You can use UMAP as a general-purpose dimension reduction technique as a preliminary step to other machine learning tasks. -
3
MNE-Python
Magnetoencephalography (MEG) and Electroencephalography EEG in Python
...MNE-Python is an open-source Python package for exploring, visualizing, and analyzing human neurophysiological data such as MEG, EEG, sEEG, ECoG, and more. It includes modules for data input/output, preprocessing, visualization, source estimation, time-frequency analysis, connectivity analysis, machine learning, statistics, and more. -
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Shapash
Explainability and Interpretability to Develop Reliable ML models
Shapash is a Python library dedicated to the interpretability of Data Science models. It provides several types of visualization that display explicit labels that everyone can understand. Data Scientists can more easily understand their models, share their results and easily document their projects in an HTML report. End users can understand the suggestion proposed by a model using a summary of the most influential criteria. -
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HDBSCAN
A high performance implementation of HDBSCAN clustering
HDBSCAN - Hierarchical Density-Based Spatial Clustering of Applications with Noise. Performs DBSCAN over varying epsilon values and integrates the result to find a clustering that gives the best stability over epsilon. This allows HDBSCAN to find clusters of varying densities (unlike DBSCAN), and be more robust to parameter selection. In practice this means that HDBSCAN returns a good clustering straight away with little or no parameter tuning -- and the primary parameter, minimum cluster... -
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TextAttack
Python framework for adversarial attacks, and data augmentation
Generating adversarial examples for NLP models. TextAttack is a Python framework for adversarial attacks, data augmentation, and model training in NLP. -
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Materials Discovery: GNoME
AI discovers 520000 stable inorganic crystal structures for research
Materials Discovery (GNoME) is a large-scale research initiative by Google DeepMind focused on applying graph neural networks to accelerate the discovery of stable inorganic crystal materials. The project centers on Graph Networks for Materials Exploration (GNoME), a message-passing neural network architecture trained on density functional theory (DFT) data to predict material stability and energy formation. Using GNoME, DeepMind identified 381,000 new stable materials, later expanding the... -
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Pytorch-toolbelt
PyTorch extensions for fast R&D prototyping and Kaggle farming
...Every-day common routines (fix/restore random seed, filesystem utils, metrics). Losses: BinaryFocalLoss, Focal, ReducedFocal, Lovasz, Jaccard and Dice losses, Wing Loss and more. Extras for Catalyst library (Visualization of batch predictions, additional metrics). By design, both encoder and decoder produces a list of tensors, from fine (high-resolution, indexed 0) to coarse (low-resolution) feature maps. Access to all intermediate feature maps is beneficial if you want to apply deep supervision losses on them or encoder-decoder of object detection task. -
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tsai
Time series Timeseries Deep Learning Machine Learning Pytorch fastai
tsai is an open-source deep learning package built on top of Pytorch & fastai focused on state-of-the-art techniques for time series tasks like classification, regression, forecasting, and imputation. Starting with tsai 0.3.0 tsai will only install hard dependencies. Other soft dependencies (which are only required for selected tasks) will not be installed by default (this is the recommended approach. If you require any of the dependencies that is not installed, tsai will ask you to install... -
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10
IVY
The Unified Machine Learning Framework
...For example, an existing TensorFlow model, and some useful functions from both PyTorch and NumPy libraries. Choose any framework for writing your higher-level pipeline, including data loading, distributed training, analytics, logging, visualization etc. Choose any backend framework which should be used under the hood, for running this entire pipeline. Choose the most appropriate device or combination of devices for your needs. DeepMind releases an awesome model on GitHub, written in JAX. We'll use PerceiverIO as an example. Implement the model in PyTorch yourself, spending time and energy ensuring every detail is correct. ... -
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AWS Neuron
Powering Amazon custom machine learning chips
...Neuron is pre-integrated into popular machine learning frameworks like TensorFlow, MXNet and Pytorch to provide a seamless training-to-inference workflow. It includes a compiler, runtime driver, as well as debug and profiling utilities with a TensorBoard plugin for visualization. -
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SMILI
Scientific Visualisation Made Easy
The Simple Medical Imaging Library Interface (SMILI), pronounced 'smilie', is an open-source, light-weight and easy-to-use medical imaging viewer and library for all major operating systems. The main sMILX application features for viewing n-D images, vector images, DICOMs, anonymizing, shape analysis and models/surfaces with easy drag and drop functions. It also features a number of standard processing algorithms for smoothing, thresholding, masking etc. images and models, both with... -
13
MMOCR
OpenMMLab Text Detection, Recognition and Understanding Toolbox
...Please refer to Getting Started for how to construct a customized model. The toolbox provides a comprehensive set of utilities which can help users assess the performance of models. It includes visualizers which allow visualization of images, ground truths as well as predicted bounding boxes, and a validation tool for evaluating checkpoints. -
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Yellowbrick
Visual analysis and diagnostic tools to facilitate ML selection
Yellowbrick extends the Scikit-Learn API to make model selection and hyperparameter tuning easier. Under the hood, it’s using Matplotlib. Yellowbrick is a suite of visual diagnostic tools called "Visualizers" that extend the scikit-learn API to allow human steering of the model selection process. In a nutshell, Yellowbrick combines scikit-learn with matplotlib in the best tradition of the scikit-learn documentation, but to produce visualizations for your machine learning workflow. -
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Catalyst
Accelerated deep learning R&D
...PyTorch 1.1+, and has been tested on Ubuntu 16.04/18.04/20.04, macOS 10.15, Windows 10 and Windows Subsystem for Linux. It's part of the PyTorch Ecosystem, as well as the Catalyst Ecosystem which includes Alchemy (experiments logging & visualization) and Reaction (convenient deep learning models serving). -
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Texthero
Text preprocessing, representation and visualization from zero to hero
Texthero is a python package to work with text data efficiently. It empowers NLP developers with a tool to quickly understand any text-based dataset and it provides a solid pipeline to clean and represent text data, from zero to hero. -
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FARM
Fast & easy transfer learning for NLP
FARM makes Transfer Learning with BERT & Co simple, fast and enterprise-ready. It's built upon transformers and provides additional features to simplify the life of developers: Parallelized preprocessing, highly modular design, multi-task learning, experiment tracking, easy debugging and close integration with AWS SageMaker. With FARM you can build fast proofs-of-concept for tasks like text classification, NER or question answering and transfer them easily into production. Easy fine-tuning... -
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TFLearn
Deep learning library featuring a higher-level API for TensorFlow
...All functions are built over tensors and can be used independently of TFLearn. Powerful helper functions to train any TensorFlow graph, with support of multiple inputs, outputs, and optimizers. Easy and beautiful graph visualization, with details about weights, gradients, activations, and more. Effortless device placement for using multiple CPU/GPU. The high-level API currently supports the most of the recent deep learning models, such as Convolutions, LSTM, BiRNN, BatchNorm, etc. -
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MMdnn
Tools to help users inter-operate among deep learning frameworks
MMdnn is a set of tools to help users inter-operate among different deep learning frameworks. E.g. model conversion and visualization. Convert models between Caffe, Keras, MXNet, Tensorflow, CNTK, PyTorch Onnx and CoreML. MMdnn is a comprehensive and cross-framework tool to convert, visualize and diagnose deep learning (DL) models. The "MM" stands for model management, and "dnn" is the acronym of deep neural network. We implement a universal converter to convert DL models between frameworks, which means you can train a model with one framework and deploy it with another. ... -
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StellarGraph
Machine Learning on Graphs
StellarGraph is a Python library for machine learning on graphs and networks. The StellarGraph library offers state-of-the-art algorithms for graph machine learning, making it easy to discover patterns and answer questions about graph-structured data. It can solve many machine learning tasks. Graph-structured data represent entities as nodes (or vertices) and relationships between them as edges (or links), and can include data associated with either as attributes. For example, a graph can... -
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Spectral Python
A python module for hyperspectral image processing
Spectral Python (SPy) is a python package for reading, viewing, manipulating, and classifying hyperspectral image (HSI) data. SPy includes functions for clustering, dimensionality reduction, supervised classification, and more. -
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ChainerRL
ChainerRL is a deep reinforcement learning library
ChainerRL (this repository) is a deep reinforcement learning library that implements various state-of-the-art deep reinforcement algorithms in Python using Chainer, a flexible deep learning framework. PFRL is the PyTorch analog of ChainerRL. ChainerRL has a set of accompanying visualization tools in order to aid developers' ability to understand and debug their RL agents. With this visualization tool, the behavior of ChainerRL agents can be easily inspected from a browser UI. Environments that support the subset of OpenAI Gym's interface (reset and step methods) can be used. -
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Coach
Enables easy experimentation with state of the art algorithms
...It exposes a set of easy-to-use APIs for experimenting with new RL algorithms and allows simple integration of new environments to solve. Coach collects statistics from the training process and supports advanced visualization techniques for debugging the agent being trained. Coach supports many state-of-the-art reinforcement learning algorithms, which are separated into three main classes - value optimization, policy optimization, and imitation learning. Coach supports a large number of environments which can be solved using reinforcement learning. -
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captcha_break
Identification codes
This project will use Keras to build a deep convolutional neural network to identify the captcha verification code. It is recommended to use a graphics card to run the project. The following visualization codes are jupyter notebookall done in . If you want to write a python script, you can run it normally with a little modification. Of course, you can also remove these visualization codes. captcha is a library written in python to generate verification codes. It supports image verification codes and voice verification codes. We use its function of generating image verification codes. ... -
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Easy-TensorFlow
Simple and comprehensive tutorials in TensorFlow
...Furthermore, since most of the developers are using TensorFlow for code development, having hands-on on TensorFlow is a necessity these days. Tensorboard is a powerful visualization suite that is developed to track both the network topology and performance, making debugging even simpler.
