Search Results for "network graph analysis"
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Showing 18 open source projects for "network graph analysis"
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Materials Discovery: GNoME
AI discovers 520000 stable inorganic crystal structures for research
Materials Discovery (GNoME) is a large-scale research initiative by Google DeepMind focused on applying graph neural networks to accelerate the discovery of stable inorganic crystal materials. The project centers on Graph Networks for Materials Exploration (GNoME), a message-passing neural network architecture trained on density functional theory (DFT) data to predict material stability and energy formation. Using GNoME, DeepMind identified 381,000 new stable materials, later expanding the dataset to include over 520,000 materials within 1 meV/atom of the convex hull as of August 2024. ... -
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PyG
Graph Neural Network Library for PyTorch
PyG (PyTorch Geometric) is a library built upon PyTorch to easily write and train Graph Neural Networks (GNNs) for a wide range of applications related to structured data. It consists of various methods for deep learning on graphs and other irregular structures, also known as geometric deep learning, from a variety of published papers. In addition, it consists of easy-to-use mini-batch loaders for operating on many small and single giant graphs, multi GPU-support, DataPipe support,... -
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DoWhy
DoWhy is a Python library for causal inference
...DoWhy is based on a unified language for causal inference, combining causal graphical models and potential outcomes frameworks. Much like machine learning libraries have done for prediction, DoWhy is a Python library that aims to spark causal thinking and analysis. DoWhy provides a wide variety of algorithms for effect estimation, causal structure learning, diagnosis of causal structures, root cause analysis, interventions and counterfactuals. DoWhy builds on two of the most powerful frameworks for causal inference: graphical causal models and potential outcomes. For effect estimation, it uses graph-based criteria and do-calculus for modeling assumptions and identifying a non-parametric causal effect. ... -
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DeepVariant
DeepVariant is an analysis pipeline that uses a deep neural networks
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. DeepVariant is a deep learning-based variant caller that takes aligned reads (in BAM or CRAM format), produces pileup image tensors from them, classifies each tensor using a convolutional neural network, and finally reports the results in a standard VCF or gVCF file. -
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Spektral
Graph Neural Networks with Keras and Tensorflow 2
Spektral is a Python library for graph deep learning, based on the Keras API and TensorFlow 2. The main goal of this project is to provide a simple but flexible framework for creating graph neural networks (GNNs). You can use Spektral for classifying the users of a social network, predicting molecular properties, generating new graphs with GANs, clustering nodes, predicting links, and any other task where data is described by graphs. -
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hloc
Visual localization made easy with hloc
...It implements Hierarchical Localization, leveraging image retrieval and feature matching, and is fast, accurate, and scalable. This codebase won the indoor/outdoor localization challenges at CVPR 2020 and ECCV 2020, in combination with SuperGlue, our graph neural network for feature matching. We provide step-by-step guides to localize with Aachen, InLoc, and to generate reference poses for your own data using SfM. Just download the datasets and you're reading to go! The notebook pipeline_InLoc.ipynb shows the steps for localizing with InLoc. It's much simpler since a 3D SfM model is not needed. ... -
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Karate Club
An API Oriented Open-source Python Framework for Unsupervised Learning
Karate Club is an unsupervised machine learning extension library for NetworkX. Karate Club consists of state-of-the-art methods to do unsupervised learning on graph-structured data. To put it simply it is a Swiss Army knife for small-scale graph mining research. First, it provides network embedding techniques at the node and graph level. Second, it includes a variety of overlapping and non-overlapping community detection methods. Implemented methods cover a wide range of network science (NetSci, Complenet), data mining (ICDM, CIKM, KDD), artificial intelligence (AAAI, IJCAI) and machine learning (NeurIPS, ICML, ICLR) conferences, workshops, and pieces from prominent journals. -
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DeepImageTranslator
DeepImageTranslator: a deep-learning utility for image translation
Created by: Run Zhou Ye, En Zhou Ye, and En Hui Ye DeepImageTranslator: a free, user-friendly tool for image translation using deep-learning and its applications in CT image analysis Citation: Please cite this software as: Ye RZ, Noll C, Richard G, Lepage M, Turcotte ÉE, Carpentier AC. DeepImageTranslator: a free, user-friendly graphical interface for image translation using deep-learning and its applications in 3D CT image analysis. SLAS technology. 2022 Feb 1;27(1):76-84.... -
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CapsGNN
A PyTorch implementation of "Capsule Graph Neural Network"
...Inspired by the Capsule Neural Network (CapsNet), we propose the Capsule Graph Neural Network (CapsGNN), which adopts the concept of capsules to address the weakness in existing GNN-based graph embeddings algorithms. By extracting node features in the form of capsules, routing mechanism can be utilized to capture important information at the graph level. As a result, our model generates multiple embeddings for each graph to capture graph properties from different aspects. -
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Minkowski Engine
Auto-diff neural network library for high-dimensional sparse tensors
The Minkowski Engine is an auto-differentiation library for sparse tensors. It supports all standard neural network layers such as convolution, pooling, unspooling, and broadcasting operations for sparse tensors. The Minkowski Engine supports various functions that can be built on a sparse tensor. We list a few popular network architectures and applications here. To run the examples, please install the package and run the command in the package root directory. Compressing a neural network to... -
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TFLearn
Deep learning library featuring a higher-level API for TensorFlow
...Easy-to-use and understand high-level API for implementing deep neural networks, with tutorials and examples. Fast prototyping through highly modular built-in neural network layers, regularizers, optimizers, and metrics. Full transparency over Tensorflow. All functions are built over tensors and can be used independently of TFLearn. Powerful helper functions to train any TensorFlow graph, with support of multiple inputs, outputs, and optimizers. Easy and beautiful graph visualization, with details about weights, gradients, activations, and more. ... -
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Neural Networks Collection
Neural Networks Collection
This project implements in C++ a bunch of known Neural Networks. So far the project implements: LVQ in several variants, SOM in several variants, Hopfield network and Perceptron. Other neural network types are planned, but not implemented yet. The project can run in two modes: command line tool and Python 7.2 extension. Currently, Python version appears more functional, as it allows easy interaction with algorithms developed by other people. -
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fastNLP
fastNLP: A Modularized and Extensible NLP Framework
...Built-in Loader and Pipe for multiple datasets, eliminating the need for preprocessing code. Various convenient NLP tools, such as Embedding loading (including ELMo and BERT), intermediate data cache, etc.. Provide a variety of neural network components and recurrence models (covering tasks such as Chinese word segmentation, named entity recognition, syntactic analysis, text classification, text matching, metaphor resolution, summarization, etc.). Trainer provides a variety of built-in Callback functions to facilitate experiment recording, exception capture, etc. Automatic download of some datasets and pre-trained models. -
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StellarGraph
Machine Learning on Graphs
StellarGraph is a Python library for machine learning on graphs and networks. The StellarGraph library offers state-of-the-art algorithms for graph machine learning, making it easy to discover patterns and answer questions about graph-structured data. It can solve many machine learning tasks. Graph-structured data represent entities as nodes (or vertices) and relationships between them as edges (or links), and can include data associated with either as attributes. For example, a graph can contain people as nodes and friendships between them as links, with data like a person’s age and the date a friendship was established. ... -
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Delta ML
Deep learning based natural language and speech processing platform
...DELTA has been used for developing several state-of-the-art algorithms for publications and delivering real production to serve millions of users. It helps you to train, develop, and deploy NLP and/or speech models. Use configuration files to easily tune parameters and network structures. What you see in training is what you get in serving: all data processing and features extraction are integrated into a model graph. Text classification, named entity recognition, question and answering, text summarization, etc. Uniform I/O interfaces and no changes for new models. -
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NiftyNet
An open-source convolutional neural networks platform for research
An open-source convolutional neural networks platform for medical image analysis and image-guided therapy. NiftyNet is a TensorFlow-based open-source convolutional neural networks (CNNs) platform for research in medical image analysis and image-guided therapy. NiftyNet’s modular structure is designed for sharing networks and pre-trained models. Using this modular structure you can get started with established pre-trained networks using built-in tools. Adapt existing networks to your imaging... -
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PyTorch Book
PyTorch tutorials and fun projects including neural talk
This is the corresponding code for the book "The Deep Learning Framework PyTorch: Getting Started and Practical", but it can also be used as a standalone PyTorch Getting Started Guide and Tutorial. The current version of the code is based on pytorch 1.0.1, if you want to use an older version please git checkout v0.4or git checkout v0.3. Legacy code has better python2/python3 compatibility, CPU/GPU compatibility test. The new version of the code has not been fully tested, it has been tested... -
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MyNook
A machine learning system for supervised document classification
An open source system for supervised document classification based on statistical machine learning techniques. On the contrary of the state of art classification techniques, MyNook just requires the title of the document, not the content itself.
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