Search Results for "network graph analysis"
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Showing 28 open source projects for "network graph analysis"
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Materials Discovery: GNoME
AI discovers 520000 stable inorganic crystal structures for research
Materials Discovery (GNoME) is a large-scale research initiative by Google DeepMind focused on applying graph neural networks to accelerate the discovery of stable inorganic crystal materials. The project centers on Graph Networks for Materials Exploration (GNoME), a message-passing neural network architecture trained on density functional theory (DFT) data to predict material stability and energy formation. Using GNoME, DeepMind identified 381,000 new stable materials, later expanding the dataset to include over 520,000 materials within 1 meV/atom of the convex hull as of August 2024. ... -
2
PyG
Graph Neural Network Library for PyTorch
PyG (PyTorch Geometric) is a library built upon PyTorch to easily write and train Graph Neural Networks (GNNs) for a wide range of applications related to structured data. It consists of various methods for deep learning on graphs and other irregular structures, also known as geometric deep learning, from a variety of published papers. In addition, it consists of easy-to-use mini-batch loaders for operating on many small and single giant graphs, multi GPU-support, DataPipe support,... -
3
DoWhy
DoWhy is a Python library for causal inference
...DoWhy is based on a unified language for causal inference, combining causal graphical models and potential outcomes frameworks. Much like machine learning libraries have done for prediction, DoWhy is a Python library that aims to spark causal thinking and analysis. DoWhy provides a wide variety of algorithms for effect estimation, causal structure learning, diagnosis of causal structures, root cause analysis, interventions and counterfactuals. DoWhy builds on two of the most powerful frameworks for causal inference: graphical causal models and potential outcomes. For effect estimation, it uses graph-based criteria and do-calculus for modeling assumptions and identifying a non-parametric causal effect. ... -
4
Koila
Prevent PyTorch's `CUDA error: out of memory` in just 1 line of code
...The library introduces a lazy evaluation mechanism that delays computation until it is actually required, allowing the framework to better estimate the memory requirements of a model before execution. By building a computational graph first and executing operations only when necessary, koila reduces the risk of running out of GPU memory during the forward pass of neural network training. This approach enables developers to experiment with larger batch sizes and more complex architectures while maintaining stable training behavior. The system acts as a thin wrapper around PyTorch tensors and operations, meaning that it integrates easily into existing PyTorch code without requiring major changes to model implementations. ... -
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Python Code Tutorials
The Python Code Tutorials
Python Code Tutorials is a large educational repository that aggregates programming tutorials from the “The Python Code” website into a structured collection of Python projects and learning materials. The repository covers a wide range of programming topics including cybersecurity, networking, web scraping, machine learning, GUI development, and automation scripts. Each tutorial typically includes complete Python code examples and explanations that demonstrate how to build real tools and... -
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DeepVariant
DeepVariant is an analysis pipeline that uses a deep neural networks
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. DeepVariant is a deep learning-based variant caller that takes aligned reads (in BAM or CRAM format), produces pileup image tensors from them, classifies each tensor using a convolutional neural network, and finally reports the results in a standard VCF or gVCF file. -
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TabPFN
Foundation Model for Tabular Data
TabPFN is an open-source machine learning system that introduces a foundation model designed specifically for tabular data analysis. The model is based on transformer architectures and implements a prior-data fitted network that can perform supervised learning tasks such as classification and regression with minimal configuration. Unlike many traditional machine learning workflows that require extensive hyperparameter tuning and training cycles, TabPFN is pre-trained to perform inference directly on tabular datasets. ... -
8
deepjazz
Deep learning driven jazz generation using Keras & Theano
deepjazz is a deep learning project that generates jazz music using recurrent neural networks trained on MIDI files. The repository demonstrates how machine learning can learn musical structure and produce original compositions. It uses the Keras and Theano libraries to build a two-layer Long Short-Term Memory network capable of learning temporal patterns in music. The system analyzes musical sequences from an input MIDI file and then generates new musical notes that follow similar stylistic... -
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VoxelMorph
Unsupervised Learning for Image Registration
VoxelMorph is an open-source deep learning framework designed for medical image registration, a process that aligns multiple medical scans into a common spatial coordinate system. Traditional image registration techniques typically rely on optimization procedures that must be executed separately for each pair of images, which can be computationally expensive and slow. VoxelMorph approaches the problem using neural networks that learn to predict deformation fields that transform one image so... -
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imgclsmob Deep learning networks
Sandbox for training deep learning networks
...The project is frequently used by developers who want to study modern convolutional neural network designs and compare their performance across datasets. -
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Spektral
Graph Neural Networks with Keras and Tensorflow 2
Spektral is a Python library for graph deep learning, based on the Keras API and TensorFlow 2. The main goal of this project is to provide a simple but flexible framework for creating graph neural networks (GNNs). You can use Spektral for classifying the users of a social network, predicting molecular properties, generating new graphs with GANs, clustering nodes, predicting links, and any other task where data is described by graphs. -
12
hloc
Visual localization made easy with hloc
...It implements Hierarchical Localization, leveraging image retrieval and feature matching, and is fast, accurate, and scalable. This codebase won the indoor/outdoor localization challenges at CVPR 2020 and ECCV 2020, in combination with SuperGlue, our graph neural network for feature matching. We provide step-by-step guides to localize with Aachen, InLoc, and to generate reference poses for your own data using SfM. Just download the datasets and you're reading to go! The notebook pipeline_InLoc.ipynb shows the steps for localizing with InLoc. It's much simpler since a 3D SfM model is not needed. ... -
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Karate Club
An API Oriented Open-source Python Framework for Unsupervised Learning
Karate Club is an unsupervised machine learning extension library for NetworkX. Karate Club consists of state-of-the-art methods to do unsupervised learning on graph-structured data. To put it simply it is a Swiss Army knife for small-scale graph mining research. First, it provides network embedding techniques at the node and graph level. Second, it includes a variety of overlapping and non-overlapping community detection methods. Implemented methods cover a wide range of network science (NetSci, Complenet), data mining (ICDM, CIKM, KDD), artificial intelligence (AAAI, IJCAI) and machine learning (NeurIPS, ICML, ICLR) conferences, workshops, and pieces from prominent journals. -
14
Pattern
Web mining module for Python, with tools for scraping
Pattern is an open-source Python library that provides tools for web mining, natural language processing, machine learning, and network analysis. The project integrates multiple capabilities into a single framework that allows developers to collect, process, and analyze textual data from the web. It includes modules for web scraping and crawling that can retrieve information from sources such as social media platforms, search engines, and online knowledge bases. -
15
MeshCNN in PyTorch
Convolutional Neural Network for 3D meshes in PyTorch
MeshCNN is a deep learning framework designed specifically for processing 3D triangular mesh data using convolutional neural networks. Unlike traditional CNNs that operate on images or voxel grids, MeshCNN performs convolution operations directly on the edges of mesh structures. This design allows the model to capture geometric relationships between mesh elements while preserving the underlying topology of 3D shapes. The framework introduces specialized layers such as edge-based convolution,... -
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DeepImageTranslator
DeepImageTranslator: a deep-learning utility for image translation
Created by: Run Zhou Ye, En Zhou Ye, and En Hui Ye DeepImageTranslator: a free, user-friendly tool for image translation using deep-learning and its applications in CT image analysis Citation: Please cite this software as: Ye RZ, Noll C, Richard G, Lepage M, Turcotte ÉE, Carpentier AC. DeepImageTranslator: a free, user-friendly graphical interface for image translation using deep-learning and its applications in 3D CT image analysis. SLAS technology. 2022 Feb 1;27(1):76-84.... -
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CapsGNN
A PyTorch implementation of "Capsule Graph Neural Network"
...Inspired by the Capsule Neural Network (CapsNet), we propose the Capsule Graph Neural Network (CapsGNN), which adopts the concept of capsules to address the weakness in existing GNN-based graph embeddings algorithms. By extracting node features in the form of capsules, routing mechanism can be utilized to capture important information at the graph level. As a result, our model generates multiple embeddings for each graph to capture graph properties from different aspects. -
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Minkowski Engine
Auto-diff neural network library for high-dimensional sparse tensors
The Minkowski Engine is an auto-differentiation library for sparse tensors. It supports all standard neural network layers such as convolution, pooling, unspooling, and broadcasting operations for sparse tensors. The Minkowski Engine supports various functions that can be built on a sparse tensor. We list a few popular network architectures and applications here. To run the examples, please install the package and run the command in the package root directory. Compressing a neural network to... -
19
TFLearn
Deep learning library featuring a higher-level API for TensorFlow
...Easy-to-use and understand high-level API for implementing deep neural networks, with tutorials and examples. Fast prototyping through highly modular built-in neural network layers, regularizers, optimizers, and metrics. Full transparency over Tensorflow. All functions are built over tensors and can be used independently of TFLearn. Powerful helper functions to train any TensorFlow graph, with support of multiple inputs, outputs, and optimizers. Easy and beautiful graph visualization, with details about weights, gradients, activations, and more. ... -
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Neural Networks Collection
Neural Networks Collection
This project implements in C++ a bunch of known Neural Networks. So far the project implements: LVQ in several variants, SOM in several variants, Hopfield network and Perceptron. Other neural network types are planned, but not implemented yet. The project can run in two modes: command line tool and Python 7.2 extension. Currently, Python version appears more functional, as it allows easy interaction with algorithms developed by other people. -
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fastNLP
fastNLP: A Modularized and Extensible NLP Framework
...Built-in Loader and Pipe for multiple datasets, eliminating the need for preprocessing code. Various convenient NLP tools, such as Embedding loading (including ELMo and BERT), intermediate data cache, etc.. Provide a variety of neural network components and recurrence models (covering tasks such as Chinese word segmentation, named entity recognition, syntactic analysis, text classification, text matching, metaphor resolution, summarization, etc.). Trainer provides a variety of built-in Callback functions to facilitate experiment recording, exception capture, etc. Automatic download of some datasets and pre-trained models. -
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StellarGraph
Machine Learning on Graphs
StellarGraph is a Python library for machine learning on graphs and networks. The StellarGraph library offers state-of-the-art algorithms for graph machine learning, making it easy to discover patterns and answer questions about graph-structured data. It can solve many machine learning tasks. Graph-structured data represent entities as nodes (or vertices) and relationships between them as edges (or links), and can include data associated with either as attributes. For example, a graph can contain people as nodes and friendships between them as links, with data like a person’s age and the date a friendship was established. ... -
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Delta ML
Deep learning based natural language and speech processing platform
...DELTA has been used for developing several state-of-the-art algorithms for publications and delivering real production to serve millions of users. It helps you to train, develop, and deploy NLP and/or speech models. Use configuration files to easily tune parameters and network structures. What you see in training is what you get in serving: all data processing and features extraction are integrated into a model graph. Text classification, named entity recognition, question and answering, text summarization, etc. Uniform I/O interfaces and no changes for new models. -
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NLP-Models-Tensorflow
Gathers machine learning and Tensorflow deep learning models for NLP
NLP-Models-Tensorflow is a collection of natural language processing model implementations built using the TensorFlow deep learning framework. The repository provides numerous examples of neural network architectures used in modern NLP research and applications, including text classification, language modeling, machine translation, and sentiment analysis. Each model implementation is designed to illustrate how common NLP architectures operate, such as recurrent neural networks, convolutional models for text processing, and transformer-style attention mechanisms. ... -
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NiftyNet
An open-source convolutional neural networks platform for research
An open-source convolutional neural networks platform for medical image analysis and image-guided therapy. NiftyNet is a TensorFlow-based open-source convolutional neural networks (CNNs) platform for research in medical image analysis and image-guided therapy. NiftyNet’s modular structure is designed for sharing networks and pre-trained models. Using this modular structure you can get started with established pre-trained networks using built-in tools. Adapt existing networks to your imaging...