Sacred is a tool to help you configure, andorganize IDSIA experiments
Sacred is a tool to help you configure, organize, log and reproduce experiments. It is designed to do all the tedious overhead work that you need to do around your actual experiment. A very convenient way of the local variables in a function to define the parameters your experiment uses. You can access all parameters of your configuration from every function. They are automatically injected by name. You get a powerful command-line interface for each experiment that you can use to change...
GNAT recognizes gene names in text and maps them to NCBI Entrez Gene
GNAT is a BioNLP/text mining tool to recognize and identify gene/protein names in natural language text. It will detect mentions of genes in text, such as PubMed/Medline abstracts, and disambiguate them to remove false positives and map them to the correct entry in the NCBI Entrez Gene database by gene ID.
March 2017: We started to upload GNAT output on Medline.