Open Source Machine Learning Software - Page 32
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OmicSelector
Feature selection and deep learning modeling for omic biomarker study
OmicSelector is an environment, Docker-based web application, and R package for biomarker signature selection (feature selection) from high-throughput experiments and others. It was initially developed for miRNA-seq (small RNA, smRNA-seq; hence the name was miRNAselector), RNA-seq and qPCR, but can be applied for every problem where numeric features should be selected to counteract overfitting of the models. Using our tool, you can choose features, like miRNAs, with the most significant diagnostic potential (based on the results of miRNA-seq, for validation in qPCR experiments). -
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CRFSharp
CRFSharp is a .NET(C#) implementation of Conditional Random Field
CRFSharp(aka CRF#) is a .NET(C#) implementation of Conditional Random Fields, an machine learning algorithm for learning from labeled sequences of examples. It is widely used in Natural Language Process (NLP) tasks, for example: word breaker, postagging, named entity recognized, query chunking and so on. CRF#'s mainly algorithm is the same as CRF++ written by Taku Kudo. It encodes model parameters by L-BFGS. Moreover, it has many significant improvement than CRF++, such as totally parallel encoding, optimizing memory usage and so on. Currently, when training corpus, compared with CRF++, CRF# can make full use of multi-core CPUs and only uses very low memory, and memory grow is very smoothly and slowly while amount of training corpus, tags increase. with multi-threads process, CRF# is more suitable for large data and tags training than CRF++ now. For example, in machine with 64GB, CRF# encodes model with more than 4.5 hundred million features quickly. -
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Ceka
Crowd Environment and its Knowledge Analysis
A knowledge analysis tool for crowdsourcing based on Weka. We also have a Python version of Crowdsourcing Learning: CrowdwiseKit on GitHub (https://github.com/tssai-lab/CrowdwiseKit). -
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DOGMA is a MATLAB toolbox for discriminative online learning. It implements all the state of the art algorithms in a unique and simple framework. Examples are Perceptron, Passive-Aggresive, ALMA, NORMA, SILK, Projectron, RBP, Banditron, etc.
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DeeProtGO
DeeProtGO is a deep learning model for predicting GO terms of proteins
This project contains the source code of DeeProtGO as well as an example of its use when predicting GO terms of the biological process sub-ontology for eukaryotic proteins. -
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Density-ratio based clustering
Discovering clusters with varying densities
This site provides the source code of two approaches for density-ratio based clustering, used for discovering clusters with varying densities. One approach is to modify a density-based clustering algorithm to do density-ratio based clustering by using its density estimator to compute density-ratio. The other approach involves rescaling the given dataset only. An existing density-based clustering algorithm, which is applied to the rescaled dataset, can find all clusters with varying densities that would otherwise impossible had the same algorithm been applied to the unscaled dataset. Reference: Zhu, Y., Ting, K. M., & Carman, M. J. (2016). Density-ratio based clustering for discovering clusters with varying densities. Pattern Recognition. http://www.sciencedirect.com/science/article/pii/S0031320316301571 -
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DiffGen
Differentially-private algorithm based on Generalization
Privacy-preserving data publishing addresses the problem of disclosing sensitive data when mining for useful information. Among existing privacy models, epsilon-differential privacy provides one of the strongest privacy guarantees and has no assumptions about an adversary's background knowledge. All the existing solutions that ensure epsilon-differential privacy handle the problem of disclosing relational and set-valued data in a privacy preserving manner separately. We developed an algorithm that considers both relational and set-valued data in differentially private disclosure of healthcare data. -
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FPF_predict
Fine Particle Fraction (FPF) predictor
Application implements models described by classical mathematical equation for in vitro deposition prediction based on characteristics of formulation and assay conditions. This work was funded by Poland-Singapore bilateral cooperation project no 2/3/POL-SIN/2012. Published article: https://www.dovepress.com/empirical-modeling-of-the-fine-particle-fraction-fornbspcarrier-based--peer-reviewed-fulltext-article-IJN -
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Isolation Forest detects data-anomalies using binary trees. Platform: R (www.r-project.org) Reference: Fei Tony Liu, Kai Ming Ting, and Zhi-Hua Zhou, “Isolation Forest”, IEEE International Conference on Data Mining 2008 (ICDM 08)
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NIVEL9
Programa para crear y ejecutar Sistemas Expertos
NIVEL9 es el nombre del software informático diseñado por el Ing. Mauricio Ernesto Alfaro, el cual se basa en las teorías de Inteligencia Artificial, específicamente de Sistemas Expertos. NIVEL9 entra en la categoría de "caparazón para sistema experto" o mejor conocido en inglés como "Expert System Shell": es decir un software para crear diferentes Sistemas Expertos y ejecutarlos dentro del mismo software. NIVEL9 nació como un proyecto para apoyar al Instituto de Ciencias del Mar y Limnología (ICMARES) de La Universidad de El Salvador (UES) en la identificación de las Familias de Anélidos Poliquetos de la costa de El Salvador en el año 2006. -
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OSXtlearn
OSXtlearn: tlearn for MacOSX
tlearn is a backpropagation neural network simulator, written by Jeff Elman. xtlearn is a version of tlearn for the X Window System. OSXtlearn is xtlearn wrapped in a MacOSX application bundle that runs ons MacOSX 10.5 or higher and that requires XQuartz. OSXtlearn is created by Harm Brouwer. -
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RobGP is a genetic programming system written from the ground up in C++. It's primary goals are efficiency, ease of use, and extensibility. It's distinguishing feature is that it has a modified version of Koza's architecture altering operations.
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This application allow user to predict dissolution profile of solid dispersion systems based on algorithms like symbolic regression, deep neural networks, random forests or generalized boosted models. Those techniques can be combined to create expert system. Application was created as a part of project K/DSC/004290 subsidy for young researchers from Polish Ministry of Higher Education.
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Arabic Corpus
Text categorization, arabic language processing, language modeling
The Arabic Corpus {compiled by Dr. Mourad Abbas ( http://sites.google.com/site/mouradabbas9/corpora ) The corpus Khaleej-2004 contains 5690 documents. It is divided to 4 topics (categories). The corpus Watan-2004 contains 20291 documents organized in 6 topics (categories). Researchers who use these two corpora would mention the two main references: (1) For Watan-2004 corpus ---------------------- M. Abbas, K. Smaili, D. Berkani, (2011) Evaluation of Topic Identification Methods on Arabic Corpora,JOURNAL OF DIGITAL INFORMATION MANAGEMENT,vol. 9, N. 5, pp.185-192. 2) For Khaleej-2004 corpus --------------------------------- M. Abbas, K. Smaili (2005) Comparison of Topic Identification Methods for Arabic Language, RANLP05 : Recent Advances in Natural Language Processing ,pp. 14-17, 21-23 september 2005, Borovets, Bulgary. More useful references to check: ------------------------------------------- https://sites.google.com/site/mouradabbas9/corpora -
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BetBoy
Using neural networks to predict outcomes of football matches
Predicting outcomes of matches using neural networks,simulations,automatic bets selector,automatic/manual database updates How to use instructions: https://sourceforge.net/p/betboy/wiki/Home/ Video presentation: http://www.youtube.com/watch?feature=player_embedded&v=I2C5TlBSB6w http://www.youtube.com/watch?feature=player_embedded&v=hZ00br89_l8 http://www.youtube.com/watch?feature=player_embedded&v=844iwI8zBZk -
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Black Hole Cortex
Sphere surface layers of visual cortex approach maximum info density
Near the surface (even horizon) of a black hole, there is maximum information density in units of squared plancks (and some translation to qubits). Similarly, our imagination is the set of all possible things we can draw onto our most dense layer of visual cortex in electricity patterns. Bigger layers have more neurons to handle those possibilities. A Black Hole Cortex is a kind of visual cortex that has density of neuron layers similar to density at various radius from a black hole. What we think our eyes see, the imagination, is the densest and smallest layer. SphereSurfaces outside it recursively have more neurons, more surface area, but less density since it has to eventually dimension-reduce to high level ideas, like there are 10000 Wikipedia page names that cover most parts of the world. We can think of Wikipedia as a layer above our brains, a global SphereSurface of large surface area (a cortex layered on billions of minds) and small (10000 most important pages) density. -
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Consilium Sentence Suggestions Tools
Consilium – User Defined sentence Suggestion Tool.
There are many tools available in market which will provide spell correction or grammer correction while making documents, but very few tools are available which are providing sentence completion according to previously entered text. But this all are providing sentence complition suggestion for sentences which are oftenly or regularly used by all people in same manner. But in reality style of writing changes person to person. While our aim is to provide a sentence suggestion tool which will give suggestion to complete the sentence according previously enterd data by the user. Output or suggestion for same sentence or word will change person to person according to previously entered data by that person. So, it will be very easy to type any document, sms, mail, chatting etc. -
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EBCS for Feature Selection
Enhanced Binary Cuckoo Search with Frequent Values and RST (EBCS)
This Filter Feature Selection approach (EBCS) with other tasks developed by PHP Programing language. Initial parameters for EBCS and FS-BCS as follows: Maximum number of iteration is 20. Population size is 20. Probability (P) is 0.25. Alpha is 0.1. After Downloading and copying the EBCS directory to directory root, and request the EBCS/index.php page to show home page which contains the following tasks: 1. The new Approach: EBCS. 2. The baseline approach: FS-BCS. 3. Enhanced Binary Cuckoo Search with traditional Objective function (Rough set theory dependency degree), This aims to evaluate the new objective function compared to traditional objective function: EBCS-Eq.(2). 4. Reducing the dataset based on the specific features which entered by user. (notice the first index is 0): Reduction. 5. Splitting dataset into training and test datasets randomly with different percentages determined by user. Note: put any dataset (CSV formt) in datasets directory. -
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EZStacking
EZStacking is Jupyter notebook generator for machine learning
EZStacking is Jupyter notebook generator for supervised learning problems using Scikit-Learn pipelines and stacked generalization. EZStacking handles classification and regression problems for structured data. It can also be viewed as a development tool, because a notebook generated with EZStacking contains: -an exploratory data analysis (EDA) used to assess data quality - a modelling producing a reduced-size stacked estimator - a server returning a prediction, a measure of the quality of input data and the execution time. -
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Face Recognition System
Face Recognition System Matlab source code
Research on automatic face recognition in images has rapidly developed into several inter-related lines, and this research has both lead to and been driven by a disparate and expanding set of commercial applications. The large number of research activities is evident in the growing number of scientific communications published on subjects related to face processing and recognition. Index Terms: face, recognition, eigenfaces, eigenvalues, eigenvectors, Karhunen-Loeve algorithm. -
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Feating constructs a classification ensemble comprising a set of local models. It is effective at reducing the error of both stable and unstable learners, including SVM. For details see the paper at http://dx.doi.org/10.1007/s10994-010-5224-5.
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Fuzzy Ecospace Modelling
FEM allows users to create fuzzy functional groups for use in ecology.
Fuzzy Ecospace Modelling (FEM) is an R-based program for quantifying and comparing functional disparity, using a fuzzy set theory-based machine learning approach. FEM clusters n-dimensional matrices of functional traits (ecospace matrices – here called the Training Matrix) into functional groups and converts them into fuzzy functional groups using fuzzy discriminant analysis (Lin and Chen 2004 – see main text for more information). Following this, FEM classifies the functional entities from a second matrix (the Test Matrix) into the groups made using the Training Matrix, generating fuzzy membership values for each unit in the Test Matrix. These values are real numbers from 0 to 1, representing increasing degrees of “truth” regarding an organism’s membership in the fuzzy set (see main text). A value of 0 represents non-membership in the fuzzy set, and a value of 1 represents total membership in the fuzzy set. Values in between represent degrees of niche overlap. -
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HoldemAI
Texas Holdem Poker AI
Full ring Texas Hold'em poker game built around an intelligent AI system. The AI uses players' betting actions to calculate a probability distribution of their hole cards and uses it to evaluate hand strength and the best possible action. Small random changes are made to mimic human behavior and make the AI less predictable. Future versions will include adaptive opponent modeling using neural networks to improve the AI's strength. The AI code can be easily adapted for input from screen scrapers.
