Search Results for "xcms"
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Showing 5 open source projects for "xcms"
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mzMatch is a Java collection of small commandline tools specific for metabolomics MS data analysis. The tools are built on top of the PeakML core library, providing mass spectrometry specific functionality and access to the PeakML file format.
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xMSanalyzer
An R package for metabolomics data extraction and quality assessment
xMSanalyzer comprises of utilities that can be classified into four main modules: 1) merging apLCMS or XCMS sample processing results from multiple sets of parameter settings, 2) evaluation of sample quality, feature consistency, and batch-effect, 3) feature matching, and 4) characterization of m/z using KEGG REST; 5) Batch-effect correction using ComBat -
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Mass Spectrometry analysis Pipeline
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Provides a graphical user interface to the xcms module for R used primarily for processing mass spectrometry data. The primary python modules used are PyQt4, matplotlib, rpy2, and pytables for HDF5 support.
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