Search Results for "aligner"
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Showing 28 open source projects for "aligner"
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LF Aligner helps translators create translation memories from texts and their translations. It relies on Hunalign for automatic sentence pairing. Input: txt, doc, docx, rtf, pdf, html. Output: tab delimited txt, TMX and xls. With web features. My email address is listed in readme.txt; for support, use the forum here. My personal website: www.farkastranslations.com.
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amrlib
A python library that makes AMR parsing, generation and visualization
... in both the GUI and as library functions. Training and test code for both the StoG and GtoS models. A SpaCy extension that allows direct conversion of SpaCy Docs and Spans to AMR graphs. Sentence to Graph alignment routines FAA_Aligner (Fast_Align Algorithm), based on the ISI aligner code detailed in this paper. RBW_Aligner (Rule Based Word) for a simple, single token to single node alignment. -
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OmegaT - multiplatform CAT tool
The free computer aided translation (CAT) tool for professionals
OmegaT is a free and open source multiplatform Computer Assisted Translation tool with fuzzy matching, translation memory, keyword search, glossaries, and translation leveraging into updated projects. -
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Bowtie, an ultrafast, memory-efficient short read aligner for short DNA sequences (reads) from next-gen sequencers. Please cite: Langmead B, et al. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10:R25.
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miRDeep*
MiRDeep*
Please cite: An, J., Lai, J., Lehman, M.L. and Nelson, C.C. (2013) miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data. Nucleic Acids Res, 41, 727-737. We will create index for you if you tell us your interested species (j.an@qut.edu.au). download command line version "MDS_command_line_Vxx.zip" clicking "Browse All Files" please find miRPlant in sourceforge for plant miRNA prediction. -
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monolingual-sentence-aligner
Monolingual Sentence Aligner
... with custom settings and fixing some output - process.js: The main entry, containing the general flow of processing. Please read Readme.md for more details. Github: https://github.com/nlpcl-lab/monolingual-sentence-aligner -
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TaBS-Pipe
Targeted Bisulfite Sequencing Data Analysis Pipeline v1.0.2
A pipeline to analyze the data obtained from targeted bisulfite sequencing through the ion-torrent platform. TaBSAP is a pipeline to map bisulfite treated sequencing reads to a genome of interest and perform methylation calls in a single step and enables a researcher to analyze the methylation levels of their samples straight away. It's main features are: -Bisulfite mapping and methylation calling in one single step -Supports single-end read alignments -Alignment seed length,... -
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PARot polar aligner
Software for polar alignment of equatorial mounts
PARot is a program for ultra fast and precise polar alignment of equatorial mounts. You can easily achieve alignment accuracy better than 1 arcmin in 5 minutes of time. You take one image of the celestial pole, rotate the mount around the RA axis and take another image. The program compares the images and shows you the necessary adjustment. The adjustment process is controlled by the live-liew created by your camera. Requirements: * A computer with Windows OS (tested with WinXP x64, Win7... -
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AC-DIAMOND is a DNA-protein aligner. The source code of AC-DIAMOND can be found here: https://github.com/Maihj/AC-DIAMOND
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VoltMR
Pure java NGS mapping soft run on Hadoop 2.0
ＶｏｌｔＭＲ is pure java NGS (DNA/RNA) mapping and realignment soft that run on Hadoop 2.0 The accuracy is comparable to BWA-MEM and novoalgin with speed faster than those aligner. Using 100 core, VoltMR finish typical exome sample (10GB),mapping, sort, mark duplicate, local realignment in 30 minitue. It use about 10GB to 15GB RAM for each hadoop mapper and reducer. Currently, VoltMR take fastq as a input and output bam/ADAM format. For DNA mapping, GATK compatible realignment/recalbration... -
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erne
ERNE - Extended Randomized Numerical alignEr
We present ERNE (Extended Randomized Numerical alignEr), a short string alignment package whose goal is to provide an all-inclusive set of tools to handle short (NGS-like) reads. ERNE comprises ERNE-FILTER (read trimming and continamination filtering), ERNE-MAP (core alignment tool/algorithm), ERNE-BS5 (bisulfite treated reads aligner), and ERNE-PMAP/ERNE-PBS5 (distributed versions of the aligners), -
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LAMSA
Long Approximate Matches-based Split Aligner
LAMSA (Long Approximate Matches-based Split Aligner) is a novel split alignment approach with faster speed and good ability of handling SV events. It is well-suited to align long reads (over thousands of base-pairs). -
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A free computer-aided translation / computer-assisted translation (CAT) tool to align and converter bitext into TMX translation memory format to be used in other CAT tools by translators and other language professionals.
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b2map
An aligner for bisulfite mapping.
This software will only work in 64bit unix/linux system. -
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Ferox
Ferox - Sequence Alignment with Fuzzy K-mers
Ferox is a DNA sequence alignment application that uses fuzzy k-mers to quickly and accurately align sets of sequence reads against a reference genome. Ferox can also be used to align whole genomes. The seeding mechanism used by Ferox is highly configurable, allowing custom fuzzy seeds to be created declaratively in an XML configuration file. -
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A translation tools suite for Computer-Aided Translation / Computer-Assisted Translation (CAT). A translation processor with translation memory, machine translation and project support, bitext aligner/converter, TMX validator, and others.
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mrMAQ
mrMAQ is a MapReduce implementation of MAQ short read aligner
mrMAQ is a MapReduce implementation of MAQ short read aligner. It's composed of a few classes that implement map and reduce interfaces, plus an optional combiner. -
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Fast Unsupervised Sentence Aligner described in "Improved unsupervised sentence alignment for symmetrical and asymmetrical parallel corpora", COLING 2010. NEWS : release 1.0b : bug fixed (release1.0a deprecated).
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OmegaT+ Computer Assisted Translation (CAT) tools platform that includes OmegaT+ (translation processor), bitext2tmx (aligner/TMX editor), and Validator (TMX validation).
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Built around LDC's champollion sentence aligner kernel, Champollion Tool Kit (CTK) aims to providing ready-to-use parallel text sentence alignment tools for as many language pairs as possible.