Showing 286 open source projects for "segmentation"

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  • 1
    Ansj Chinese word segmentation

    Ansj Chinese word segmentation

    Ansj word segmentation

    The real java implementation of ict. The word segmentation effect is faster than the open source version of ict. Chinese word segmentation, name recognition, part-of-speech tagging, user-defined dictionary. This is a java implementation of Chinese word segmentation based on n-Gram+CRF+HMM. The word segmentation speed reaches about 2 million words per second (tested under mac air), and the accuracy rate can reach more than 96%.
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  • 2
    Edges

    Edges

    Structured Edge Detection Toolbox

    Structured Edge Detection (Edges) is a MATLAB toolbox implementing the structured forests method for fast and accurate edge detection (up to ~60 fps in many settings). The toolbox also includes the Edge Boxes object proposal method, fast superpixel generation, and utilities for training, evaluation, and integration with vision pipelines. High performance (frames per second performance depending on settings). Integration with MATLAB and compatibility with external vision pipelines. Fast edge...
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  • 3
    Gimias

    Gimias

    Graphical Interface for Medical Image Analysis and Simulation

    GIMIAS is a workflow-oriented environment for solving advanced biomedical image computing and individualized simulation problems, which is extensible through the development of problem-specific plug-ins. In addition, GIMIAS provides an open source framework for efficient development of research and clinical software prototypes integrating contributions from the Physiome community while allowing business-friendly technology transfer and commercial product development.
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  • 4
    CRFasRNN

    CRFasRNN

    Semantic image segmentation method described in the ICCV 2015 paper

    CRF-RNN is a deep neural architecture that integrates fully connected Conditional Random Fields (CRFs) with Convolutional Neural Networks (CNNs) by reformulating mean-field CRF inference as a Recurrent Neural Network. This fusion enables end-to-end training via backpropagation for semantic image segmentation tasks, eliminating the need for separate, offline post-processing steps. Our work allows computers to recognize objects in images, what is distinctive about our work is that we also recover the 2D outline of objects. Currently we have trained this model to recognize 20 classes. This software allows you to test our algorithm on your own images – have a try and see if you can fool it, if you get some good examples you can send them to us. ...
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  • 5

    SLMSuite

    A suite of algorithms for segmenting genomic profiles

    SLMSuite is a collection of algorithms, based on shifting level models (SLM), for segmenting genomic profiles generated by array and second generation sequencing experiments for the detection of genomic regions involved in CNVs. The SLMSuite contain an R library with the segmentation algorithms and three wrappers that allow to use them in Python, Ruby and C++. #### Installation #### After download extract the SLMSuite files from the command line with: tar -xvf slmsuite-1.0.tar.bz2 #### Usage #### You can find a comprehensive manual inside the doc/ folder. Examples on how to use the wrappers are found inside the respective folders.
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  • 6
    To perform this program. This code is performed to get results for our paper: Tran Manh Tuan, Le Hoang Son, "Dental segmentation from X-ray images using semi-supervised fuzzy clustering with spatial constraints", submitted
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  • 7
    ...This code is performed to get results for our paper: Le Hoang Son, Tran Manh Tuan, "A cooperative semi-supervised fuzzy clustering framework for dental X-ray image segmentation", submitted
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  • 8
    ZORE is a syntax-based Chinese (Zh) ORE system, which can extract relations and semantic patterns from Chinese text. ZORE identifies relation candidates from auto- matically parsed dependency trees, and then extracts relations with their semantic patterns iteratively through a novel double propagation algorithm. Empirical results on two data sets show the effectiveness of the proposed system. This software source is under GPL (v.3), and a separate commercial license issued by the authors for...
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  • 9
    SegmentIt

    SegmentIt

    Interactive Image Segmentation Tool

    SegmentIt is an interactive image segmentation tool that allows to switch back and forth between the watershed approaches (watershed from markers and hierarchical watershed) so the user can explore the strengths of both.
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  • 10
    MCCCS

    MCCCS

    Multi Channel Classification and Clustering

    Here we present an image-based Multi Channel Classification and Clustering System (MCCCS). It is an generalized, script-based classification system for processing various kinds of image data. Due to the modular design, individual processing-components can be easily adapted, extended or exchanged by own extensions. See project website for installation instructions.
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  • 11
    Welsh Natural Language Toolkit

    Welsh Natural Language Toolkit

    WNLT is a suite of open source natural language modules for the Welsh

    The project supports the Welsh Language Technology domain with a set of NLP tools that drive innovation and advance the development of sophisticated textual analysis solutions. The WNLT project delivers four core NLP modules; a) Word Segmentation for separating text into words b) Sentence Boundary Disambiguation for finding sentence boundaries c) Part of Speech Tagger for determining the part of speech of each word d) Morphological Analyser for identifying the root form (lemma) of words. The modules are written in JAVA and ‘wrapped’ for execution under the General Architecture for Text Engineering (GATE) framework. ...
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  • 12
    The"Amip" GUI is intended to provide code examples of the methods proposed in: "Unsupervised image segmentation for microarray spots with irregular contours and inner holes" authors: Bogdan Belean, Monica Borda, Jörg Ackermann, Ina Koch and Ovidiu Balacescu Journal: BMC Bioinformatics, 2015, 16:412 https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-015-0842-3 PDE were used for grid alignment, whereas autocorrelation driven PDE and k-means clustering were used for spot segmentation. ...
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  • 13

    VolumStudio3d

    Volumetric Rendering Software

    ...THE INSTRUCTIONS TO COMPILE ARE NOT YET AVAILABLE -- Based on VTK 4.2.2 / Java 1.4 An old software wrote several years ago (1999 - 2002). - Volumetric Rendering - Virtual endoscopy - Segmentation (extract/isolate parts from volum) - Pattern Search (intestinal polyps search)
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  • 14
    ...In object tracking, the object is located and the moving object is followed. One of the fundamental steps in many computer based vision systems for object tracking and motion detection is real-time segmentation of moving regions in the image sequences. Segmentation is done in order to detect the object accurately. Usually cameras are used as input sensors, for recording.  Front end- MATLAB
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  • 15
    as3delaunay

    as3delaunay

    Delaunay triangulation and Voronoi diagram for Flash Builder 4 project

    ...It is based on the well-known work of Raymond Hill and offers developers an efficient way to create and manipulate geometric structures for use in Flash and other AS3-based environments. The library enables users to generate Voronoi diagrams from a set of input points, allowing applications such as procedural map generation, image segmentation, and spatial partitioning. By handling complex geometric relationships automatically, it simplifies the process of building interactive or data-driven visualizations. The project emphasizes performance and mathematical accuracy while maintaining readability for developers working in ActionScript. Its codebase serves as a reliable foundation for anyone implementing geometry-based algorithms or graphical systems within AS3 projects.
    Downloads: 2 This Week
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  • 16

    Automatic cell lineage reconstruction

    Automatic segmentation and tracking for 3D time-lapse microscopy

    From Amat et al., Nature Methods, 2014*: "The comprehensive reconstruction of cell lineages in complex multicellular organisms is a central goal of developmental biology. We present an open-source computational framework for segmentation and tracking of cell nuclei with high accuracy and speed. We demonstrate its (1) generality, by reconstructing cell lineages in four-dimensional, terabyte-sized image data of fruit-fly, zebrafish and mouse embryos, acquired with three different types of fluorescence microscopes, (2) scalability, by analyzing advanced stages of development with up to 20,000 cells per time point, at 26,000 cells min-1 on a single computer workstation, and (3) ease of use, by adjusting only two parameters across all data sets and providing visualization and editing tools for efficient data curation. ...
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  • 17
    Advanced Normalization Tools ( ANTs )

    Advanced Normalization Tools ( ANTs )

    Multidimensional image registration, segmentation and statistics

    *** This is an archive only, please see https://github.com/ANTsX for this and other ANTsX tools *** Image registration with variable transformations (elastic, diffeomorphic, diffeomorphisms, unbiased) and similarity metrics (landmarks, cross-correlation, mutual information, etc). Image segmentation with priors & nonparametric, multivariate models. *** Current ANTs code, binaries (Mac, Windows, Linux) and support is hosted at Github *** https://github.com/ANTsX/ANTs Docker hub: https://hub.docker.com/u/antsx Older code and binaries remain available here on SourceForge (1.9x, pre 2014). If you are new to ANTs you should probably go to Github and get the latest code.
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    Downloads: 5 This Week
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  • 18

    DRAMMS

    A Deformable Medical Image Registration Toolbox

    DRAMMS is a software package designed for 2D-to-2D and 3D-to-3D deformable medical image registration tasks. Released by Section of Biomedical Image Analysis (SBIA) at the University of Pennsylvania. Some typical applications of DRAMMS include, -- Cross-subject registration of the same organ (can be brain, breast, cardiac, etc); -- Mono- and Multi-modality registration (MRI, CT, histology); -- Longitudinal registration (pediatric brain growth, cancer development, mouse...
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    Downloads: 17 This Week
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  • 19

    ijTools

    A set of plugins and tools for ImageJ (Image processing sofware)

    A collection of plugins and tools for the ImageJ software. Contains modules for image filtering (directional filtering), segmentation, analysis (perimeter estimation, geodesic diameter...), or visualisation (image overlay).
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  • 20

    GeoSegmenter

    A Chinese word segmenter for the geoscience domain

    GeoSegmenter is a Chinese word segmenter built specifically for the geoscience domain. It uses the conditional random fields (CRF) framework to build segmentation models. GeoSegmenter is trained with manually annotated geoscience documents.
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  • 21
    K-Surfer

    K-Surfer

    A KNIME extension for the management and analysis of FreeSurfer Data

    ...K-Surfer consists of a suite of KNIME nodes that perform several tasks, such as importing diffusion data generated from TRACULA, importing morphological measures obtained from the segmentation and reconstruction of neuroimages and visualising the probability distribution of white matter pathways. For installation guide read the pdf inside the zip. References: Sarica Alessia, Giuseppe Di Fatta, and Mario Cannataro. "K-Surfer: A KNIME Extension for the Management and Analysis of Human Brain MRI FreeSurfer/FSL Data." ...
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  • 22

    Quant-CT

    Micro-CT image stack segmentation and quantification

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  • 23

    Automatic Compound Processing (AuCoPro)

    Automatic compound splitting and semantic analysis of compounds

    ...Specifically, we will explore the possibility to create new knowledge about closely-related languages, and efficiently develop additional, more advanced resources for (a) compound segmentation; and (b) the semantic analysis of compounds; as such, the project will be divided into two interrelated subprojects, to be executed simultaneously. The focus in this project will be on Afrikaans (with Dutch as the closely-related, well-sourced language), which will lay grounds for future work on other closely-related language pairs.
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  • 24
    Wukong

    Wukong

    Highly customizable full-text search engine

    Efficient indexing and searching (1M Weibo 500M data is indexed in 28 seconds, search response time is 1.65 milliseconds, and search QPS is 19K). Support Chinese word segmentation (concurrent word segmentation using the sego word segmentation package, speed 27MB/sec). Support to calculate the proximity distance of keywords in the text (token proximity). When a request to add a document to the index comes in, the main coroutine will send the text to be segmented to a word segmentation coroutine through a channel, and the coroutine will segment the text and send it to a word segmentation through another channel. ...
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  • 25
    2P Toolbox

    2P Toolbox

    Two-Photon Data Analysis Toolbox

    The 2P_Tools.jar is a series of hopefully useful Fiji Plugins to evaluate data acquired by two-photon imaging. It supports multiple features like conversion to normalized image stacks, preprocessing and image segmentation.
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