Search Results for "regular expression tool" - Page 8
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Showing 382 open source projects for "regular expression tool"
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mirPRo
Tool for miRNA-seq analysis in C++
mirPRo is a tool for miRNA-seq analysis. It can quantify known and novel miRNAs in single-end RNA-seq data and provide useful functions such as IsomiR detection and "arm switching" identification, miRNA family quantification, and read cataloging in terms of genome annotation. mirPRo only works for species that has reference genome. [1] Who are we? -
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SURCOMED
SUrvival COmbined effect-driven cancer MEchanism Discovery
Survival analyses based on the Kaplan-Meier estimate have been pervasively used to support or validate the relevance of biological mechanisms in cancer research. Recently, with the appearance of gene expression high-throughput technologies, this kind of analysis has been applied to tumour transcriptomics data. In a ‘bottom-up’ approach, gene-expression profiles that are associated with a deregulated pathway hypothetically involved in cancer progression are first identified and then subsequently correlated with a survival effect, which statistically supports or requires the rejection of such a hypothesis. ... -
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EBprotV2
Bayesian Analysis of labeling-based Quantitative Proteomics Data
EBprotV2 is an extension to the existing EBprot (version 1) which adopts a more flexible non-parametric mixture model. It serves as an differential expression analysis tool which takes into account the direct peptide to protein hierarchy which differs from the usual analysis which occurs at the protein-summary level. The tool is implemented in C++ which minimize computational time and also, incorporates an additional module which help users to generate comparison ratios between groups with multiple samples. -
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Notepad3
Light-weight Scintilla-based text editor with syntax highlighting
Notepad3 is a fast and light-weight Scintilla-based text editor with syntax highlighting. Notepad3 is an excellent replacement for the default Windows text editor. Notepad3 offers many extra features over Notepad. It has a small memory footprint, but is powerful enough to handle most programming jobs. -
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WIMSi
Bioinformatics Tools for the Anaysis of DNA Methylation Data
Genome-wide DNA methylation analyses find only modest correlations between differential methylation at gene promoters and expression. We created a new approach to methylation analysis based on shape-similarity that finds stronger associations between methylation and expression than previously observed. WIMSi includes both DISCOVERY and GENE LIST tools. The DISCOVERY tool is designed to discover patterns of methylation that correlate with differential expression, with minimal prior assumptions about what patterns should exist in the data. ... -
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Angular Websocket
The missing Angular WebSocket module for connecting client apps
...It offers a set of convenience methods and callbacks, such as onMessage, onOpen, onClose, and onError, to keep WebSocket handling consistent with other Angular services. Developers can filter messages by string or regular expression and optionally disable automatic $digest calls when needed for performance. The project can be consumed via Bower, npm, CDN, or manual download, making it easy to introduce into legacy build setups. It aims to be the “missing WebSocket module” for AngularJS. -
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Regex UI
Clean interface to execute and test your regular expressions.
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IntelliJ plugin for Haskell
IntelliJ plugin for Haskell
When I was learning Haskell, I missed the nice features of IntelliJ IDEA. My first approach was to use the default way of creating an IntelliJ plugin by defining a grammar and a lexer according to Haskell report. That didn't work out because I could not define all the recursion. Then I decided to use grammar and lexer definitions only for tokenizing and parsing Haskell code, and not for syntax checking the code. This is needed for syntax highlighting, all kinds of navigation, and so on.... -
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Rootvole
a text parsing library that matches text with concepts.
For general processing of voice queries we developed a text parsing library named 'Rootvole' that can be used to match text with semantic concepts. The algorithm was implemented in Java and can be described as a form of a parsing expression grammar, where we generate the expressions to be detected beforehand by regular expressions and store them in a vocabulary. The central class is the parser class, which is instantiated as a series of vocabularies, simple text lists that describe tokens and synonyms, and value descriptors. It's meant as a lightweight alternative to "real" NLP (natural language processing). -
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Regular Expression Editor (RegExpEditor)
regex as a tool, not as a problem
Regular Expressions (aka regex, regexp) made easy. This simple tool manipulates text with regular expressions. Highlighting of regular expression results. See the real power of regex! Use Scala to do manipulate your search results even more. -
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Bulk File Processor - Cinchoo
Simple and easy to use bulk file processing
Bulk file processing tool is an easy to use file processor that allows to carry out customized repeated operations on multiple files easily. With this tool, you can instruct the tool to process files in entire directories and subdirectories at once with a powerful preview and with multiple tools. It was designed to be easy to use yet powerful enough to handle some of the most complex repeatable tasks. The very basic functionality it provides is that it allows to rename file names in... -
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allim
Allelic imbalance meter (Allim), a new tool for measuring allele speci
...Second, Allim includes a sequence specific simulation tool to estimate the remaining mapping bias. This estimated mapping bias is then incorporated in the statistical tests for allelic imbalance -
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BaseNet
Bacterial sRNA analysis tool
Perform gene expression profiling and predict novel sRNAs and automatically correlate co-differentially expressed sRNA-mRNA pairs to enhance target prediction and construct sRNA-mediated regulatory network. -
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scell
single-cell RNA-seq analysis software
SCell is an integrated software tool for quality filtering, normalization, feature selection, iterative dimensionality reduction, clustering and the estimation of gene-expression gradients from large ensembles of single-cell RNA-seq datasets. SCell is open source, and implemented with an intuitive graphical interface. Binary executables for Windows, MacOS and Linux are available at http://sourceforge.net/projects/scell, source code and pre-processing scripts are available from https://github.com/diazlab/SCell. ... -
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Expression Lab
Regular Expression workbench for .Net
Expression Lab is a lightweight Windows application based on the .Net Framework 4.0 that allows you to test regular expression (.Net flavour) patterns with real time results displayed on your target data. -
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urlregwatch
Check internet pages for changes by regular expression
See README.md at github. -
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vim-easy-align
A Vim alignment plugin
vim-easy-align is a Vim/Neovim plugin that makes it simple to align text by a pattern, character, or regular expression across a selection or motion. Instead of hand-inserting spaces and fiddling with tabs, you select lines and invoke an interactive prompt that previews the alignment as you type the rule. It supports multiple delimiters—commas, colons, equals signs, pipes—and can align on the nth occurrence or on complex regex groups. -
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Dev-C++ for Homeworks
Orwell Dev-Cpp with author authentication for homeworks
Orwell Dev-C++ with author authentication. Perfect for student homeworks, if you don't want your students to copy their homework files from others. Authenticated files are regular source files with student's name and a security hash added at the end. Any cheating attempt by copying in the files / changing name will invalidate the hash and can be detected by the teacher. In addition, paste in authenticated files is only allowed from one's own files. The CheckHash.exe tool checks the hash and reports the authentication status of of all .cpp files in the current directory. ... -
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ChIP-RNA-seqPRO
ChIP-RNA-sequencing-processing (ChIP-RNA-seqPRO)
ChIP-RNA-seqPRO: A strategy for identifying regions of epigenetic deregulation associated with aberrant transcript splicing and RNA-editing sites. Runnable python scripts packaged together with customized annotation libraries, demo data input and README guide. 9/26 : v1.1 Updated MAIN_IV to debug error thrown by python pandas no longer supporting 'subset'. This code will no longer be actively maintained/updated here. A cloud-based resource for comparative analysis of epigenetic,... -
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EDM Calibration Baseline Fitting
EDMFit is an adjustment tool to estimate EDM calibration parameters.
An EDM calibration baseline is used to derive specific instrument errors of the electronic distance measurement (EDM) unit of a total station. EDMFit is a simple adjustment tool to estimate the EDM calibration parameters (addition constant and/or scale parameter). The adjustment process is according to ISO 17123-4. The parameters are checked for significance, to avoid an overestimation. Based on two classical hypothesis testing, EDMFit provides a reliable outlier detection. For... -
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FREJ stands for "Fuzzy Regular Expressions for Java" - it is a command-line tool and library which allow you easily compare strings with patterns disregarding nasty typos and considering several variants (like "Barack Obama", "B.H.Obama" etc.) Project sources are moved to github: https://github.com/RodionGork/FREJ
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CoGA
R package for differential co-expression analysis
...In addition to the differential co-expression analyses, the tool provides graphical interfaces for network visualization, ranking of genes according to their "importance" in the network, and the standard single gene differential expression analysis. -
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PCRater
Automatic assessment of PCR assays.
PCRater is a GUI-based tool for a regular, automatic assessment of PCR assays. -
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A Tool for Retrieval, Visualization and Analysis of biological Pathways. Import a Gene or Protein Set from any Excel file. Automatically find signaling Pathways from KEGG. Integrate your Data in Seconds with a live interactive Force-directed Layout.
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Files Cleaner
A tool to help renaming files easily
A multifunctions software to clean up your files with ease. 2 ways are proposed to achieve this : filters and regular expressions. While filters are quick and easy to create, regex are more powerfull and versatile.
