Search Results for "k-meleon" - Page 8
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Showing 334 open source projects for "k-meleon"
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NGSimple
NGS - Next-Generation Sequencing sIMulation PipeLinE
.... input: reference + parameter output: ./1.fastq/reads.fastq assemly.pl assemble the reads (./1.fastq/reads.fastq) from those designed libraries to assemblies. based on the parameters specified in CONFIG file. It will generate assmblies with different K-mer (./2.assembly/*), and choose the assembly with largest n50. Finally, it will produce a quartile summary and mummerplot for each for you to select a good parameter combination. insert_size.pl will take real Illumina data as -
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This is a copy of OpenWag200G firmware. Maintainers: woytekm->volkan-k->me Atm, there are only minor changes, but that's going to change in the future. (I'm working on rewriting MySetup in c, and restyling/cleaning up a bit rest of the web UI :) I'll release updated files, when they are ready. (few months, most likely...) UPDATE: I'm done with linksys webui, only part left is custom one. DISCLAIMER: The OpenWAG200 Custom Firmware is supplied WITH NO WARRANTIES WHATSOEVER...
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PriMux is a k-mer based library for genomic investigations, and for development of PCR signatures that may include degenerate base pairs
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Rogue
An adventure "Legend of Zelda"-ish game
For now, a simple python/pygame game that is needing of heavy development. I am working alone (so far) on this project, so it will be very slow. Please be patient, for this is not what the game will be like in the end. This is just me giving a sneak peak at something much nicer to come. And as I said before, I am so far alone and a bit of a novice in this project, so please be patient: I hope to make better things with it. Update: I have a new homepage up. Mostly complete right now, I... -
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Machine learning library that performs several clustering algorithms (k-means, incremental k-means, DBSCAN, incremental DBSCAN, mitosis, incremental mitosis, mean shift and SHC) and performs several semi-supervised machine learning approaches (self-learning and co-training). --------------------------------------------------------------------------- To run the library, just double click on the jar file. Also, you can use the following command line: Java -Xms1500m -jar "ML Library.jar...
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Incremental Mitosis code for paper: Rania Ibrahim, Naglaa Ahmed, Noha A. Yousri, Mohamed A. Ismail: Incremental Mitosis: Discovering Clusters of Arbitrary Shapes and Densities in Dynamic Data. ICMLA (1) 2012: 102-107. ---------------------------------------------------------------------------- To run Incremental Mitosis, please type the following in the command line: Java -jar incrementalMitosis.jar [f] [k] [inputFilename] [patternNumber] [distanceMethod(euclidean,cosine,pearson,KLD,jaccard...
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Applying Mitosis Clustering Algorithms. Noha A. Yousri, Mohamed S. Kamel, Mohamed A. Ismail: A distance-relatedness dynamic model for clustering high dimensional data of arbitrary shapes and densities. Pattern Recognition 42(7): 1193-1209 (2009). Link: http://www.sciencedirect.com/science/article/pii/S0031320308003701 --------------------------------------------------------------------------- To run Mitosis, please type the following in the command line: Java -jar mitosis.jar [f] [k...
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K-Surfer
A KNIME extension for the management and analysis of FreeSurfer Data
K-Surfer is a novel and unique software plugin for KNIME for the management and analysis of FreeSurfer brain dMRI data. K-Surfer consists of a suite of KNIME nodes that perform several tasks, such as importing diffusion data generated from TRACULA, importing morphological measures obtained from the segmentation and reconstruction of neuroimages and visualising the probability distribution of white matter pathways. For installation guide read the pdf inside the zip. References: Sarica... -
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... http://rdp.cme.msu.edu/tutorials/framebot/RDPtutorial_FRAMEBOT.html. Updates: FrameBot now uses a kmer pre-filtering heuristic for no-metric-search. This pre-filtering may increase the speed by one to two orders of magnitude. CITATION: Wang, Q., Quensen, J. F., Fish, J. A., Lee, T. K., Sun, Y., Tiedje, J. M., and Cole, J. R. 2013. Ecological patterns of nifH genes in four terrestrial climatic zones explored with targeted metagenomics using FrameBot, a new informatics tool. mBio 4:e00592-13.
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CSS Hero Community Edition
Easily customize WordPress themes, live.
... theme displays on desktop, tablet and mobile devices. *How to get started? You can check the compatible themes at http://www.csshero.org/themes. However you can make any WordPress theme compatible with CSS Hero. Watch this HOW-TO video: https://www.youtube.com/watch?v=zhkvQ9-vp-k -
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K-MeleonCCF is a Web browser which for the Microsoft Windows platform. It is an unofficial version of K-Meleon and based on the same Gecko layout engine as Mozilla Firefox.
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SK: Alternatívny program pre vyhľadávanie v zozname daňových subjektov k java programu, ktorý bol k dispozicí na stránke www.drsr.sk (teraz www.financnasprava.sk) EN: QT alternative for java program zzndphapp from www.drsr.sk
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fmurf
osc tuio midi dmx hub
multi touch application for openframeworks, osc, puredata, reactivision/CCV -
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constrainedLATIN
A one-dimensional implementation of a constrained LATIN method
constrainedLATIN illustrates a simple one-dimensional implementation of a constrained LATIN method for modelling quasi-brittle failure. Unlike classical LATIN methods, this novel algorithm can trace snap-back responses. Reference B. Vandoren, K. De Proft, A. Simone, and L. J. Sluys. A novel constrained LArge Time INcrement method for modelling quasi-brittle failure. Computer Methods in Applied Mechanics and Engineering, 265:148-162, 2013 -
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Quikr
Method for rapid reconstruction (phylotyping) of bacterial communities
Quikr is a QUadratic, Iterative, K-mer based Reconstruction technique that utilizes sparsity promoting ideas from the field of compressed sensing to reconstruct the composition of a bacterial community (when the input data is 454-like pyrosequencing data). This extremely fast method comes with a default training database but can be custom trained. Typically reconstruction is accurate down to the genus level. See the README file for installation directions. Usage details are in the folder... -
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K-mer counting
an efficient tools for k-mer acounting
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ScreenGuard
Put a vault on your Windows Login screen
ScreenGuard adds a locked layer to your windows login screen. It can only be unlocked with a unique USB drive and combo. Please see "What's new in this version" for update info. Please note that the "Designed for windows 7" and "Compatible with windows 8" logo's are not part of ScreenGuard. System Requirements : ScreenGuard v1.0 - http://blackboxsoftwares.tk/projects/screenguard-v1.0/ 2.0MB Hard drive space Net framework 4.5 or above Windows 7 or 8 What's new : Emergency Login... -
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EPPL
Embedded Port Pins Library
It is a special library created to manage pins of microcontroller in any embedded system. This is the whole ideology where the connection between a created software has to be independent from a physical pins mapping. For now it is working on AVR only - but it is prepared to be ported to next processors families. See generated documentation: http://k-el.com/dochost -
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Cdoc is a C documentation tool. It generates web-based documentation from source files containing K&R or ANSI C. Function declarations are combined with the immediately preceeding comment to generate a description similar to a standard library definition
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prcs2hg
Command to convert a PRCS project to Mercurial revisions
prcs2hg is a command (and also a Python package) to convert a PRCS project to Mercurial revisions. It would help you publish the revision history of an obsolete project whose changes were maintained with PRCS. prcs2hg requires a working prcs command to extract versions from a PRCS repository and this project also provides the restored 'k' versions of PRCS for use with prcs2hg. The source code repository is separately hosted on Bitbucket with a public issue tracker. -
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Fast Matrix for Java
General purpose matrix utilities for Java in Parallel Computing
Fast Matrix for Java (fm4j) is a general-purpose matrix utility library for computing with dense matrices. fm4j encapsulated different underlying implementations and select the optimal one in run-time depending on the size of the input matrix. Moreover, fm4j employs Java (Tm) Concurrency to take advantage of the computation power of multi-cor processors. -
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HErCoOl
High-throughput Error Correction by Oligomers
Error correction software for next-generation sequencing data based on k-mer spectrum. -
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PINNLib
Pseudo-inverse associative neural networks library
C++ implementation of high-performance associative neural networks models based on pseudo-inverse learning rule, also known as projection rule or attractor-based rule -
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GENIE (GEne-geNe IntEraction)
GPU based Parallel Gene-Gene Interaction Analysis
... interaction analysis for binary traits. Here we present a novel software package GENIE, which utilizes the power of multiple GPU or CPU processor cores to parallelize the interaction analysis. Citation: Chikkagoudar, S., Wang, K., & Li, M. (2011). GENIE: a software package for gene-gene interaction analysis in genetic association studies using multiple GPU or CPU cores. BMC research notes, 4(1), 158. -
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HECTOR
HECTOR is parallel error corrector for 454 datasets
We present HECTOR, a parallel multistage k-hopo spectrum based homopolymer-length error corrector for 454 sequencing data.