Search Results for "cell" - Page 7
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Showing 422 open source projects for "cell"
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Snapshot Demo
Snapshot models the genes and reactions within human cells
Snapshot is a poly-omics model of the human cell allowing you to edit genes and see how it affects cell functionality and what diseases might arise. The full Genome scale metabolic model consists of the following: 92 Genes 53 Reactions 109 Metabolites 3 Cellular Compartments 7 Diseases Which can be found here for only £2!: https://www.scarboroughbiotech.com/ Note demo version is a much smaller genome scale model. -
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SPARTA
Direct Simulation Monte Carlo (DSMC) Simulator
SPARTA is a parallel DSMC code for performing simulations of low-density gases in 2d or 3d. Particles advect through a hierarchical Cartesian grid that overlays the simulation box. The grid is used to group particles by grid cell for purposes of performing collisions and chemistry. Physical objects with triangulated surfaces can be embedded in the grid, creating cut and split grid cells. -
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pyExactMouse
Promote mouse exactness with keyboard
Double click to run this Python script and you can control the mouse cursor exactly with the 4 keys UP, DOWN, LEFT, RIGHT on keyboard. -
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grd
A CSS grid framework using Flexbox. Only 321 bytes (Gzipped)
A CSS grid framework using Flexbox. Simple and provides just 2 base classes Grid and Cell and some modifiers. Light-weight, only 321 bytes (Gzipped). Flexible, easy-to-use Flexbox features. Flexible Box Layout Module and calc() as CSS unit values used in Grd are available on modern browsers (Chrome, Firefox, Safari, Opera, Edge, and IE11). If you want to use Grd with Sass, you can choose grd-sass as Sass port. -
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JETT
JETT - Java Excel Template Translator
JETT is a Java 5.0 API that reads an Excel spreadsheet as a template, takes your data, and creates a new Excel spreadsheet that contains your data, formatted as in the template. It works with .xls and .xlsx template spreadsheets. -
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micro_tech
This software is about how to increase number of cells
Plants play a important role in our lives to make our environment neat and clean and we designed a software “Mi-cro Tech” in which we increase the cells production through metabolic engineering which is being very effective to us and its cost is also very effective .Now-a-days , the whole world are facing problems of limited fossil fuel re-sources and associated environmental problems and world need some sustainable processes for the production of chemicals, fuels and materials from renewable resources .So, we made a software in which we use metabolic engi-neering technique or transforming microorganisms into efficient cell factories for these compounds. -
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XLSX parser for Java in 150 LOC
An extremely minimal parser for XLSX (Excel) files
...The closest free option would be apache POI with about 8+ megabyte of JARs and features I don't need. The input is an XLSX file and the output is a Map<String,String[][]> with key of 'sheet name' and a String[][] of cell data. Dates are reformatted to dd/MM/yyyy (configurable in the code). The output of String[][] is to keep the interface compatible with CSV (eg. OpenCSV). -
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chemfiles
Modern library for chemistry file reading and writing
Chemfiles is a modern and high-quality library for reading and writing trajectory files created by computational chemistry simulations program. These trajectories contains atomic positions, velocities, names, topology and sometimes more. Running simulations produce enormous amounts of data, which has to be post-processed to extract physical information about the simulated system. Chemfiles provides an interface to access this information which is - unified: the same code will work with... -
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Psygraph
Code for the Psygraph mobile application
...Psygraph allows quantification and visualization of your behavior (biofeedback) by utilizing data gathered from your mobile device. It provides objective measurements of what you spend your time doing, and where you do it. Your location can be monitored using either GPS or cell network sources. -
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SCEO
Single Cell Event Ordering Algorithm
This is an implementation of the Single Cell Event Ordering algorithm that was described in J. De Bie et al., "Single cell sequencing reveals the origin and the order of mutation acquisition in T-cell acute lymphoblastic leukaemia". Usage: java -jar SCEO.jar input=input.txt output=output.txt N=n with input = input file containing tab delimited matrix with for each gene a (named) row and for each cell a (named) column with the values 1=event present, 0=event absent, -1=NA output = output file with an enumeration of the most possible orders of events, preceded by a value indicating the probability of this option. ... -
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Capsule Cell Tracker
A user-friendly GUI for cell tracking and force estimation.
...In present work we develop an interpolation formula for drag forces on capsule shaped cells near walls that can be used as a simple and accurate substitute for the complex computational fluid dynamic simulations otherwise required to determine fluid-cell interactions. Please refer to our home page or contact us for more information http://www.physics.umu.se/english/research/biological-physics/the-biophysics-and-biophotonics-group/ The software is related to the paper: 'A drag force interpolation model for capsule-shaped cells in fluid flows near a surface' Krister Wiklund, Hanqing Zhang, Tim Stangner, Bhupender Singh, Esther Bullitt, Magnus Andersson* Department of Physics, Umeå University, 901 87 Umeå, Sweden -
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GnuPlot Add-in for Excel
The power of GnuPlot combined with the ease of Excel
...GnuPlot scripts are stored in Excel along with the generated graphs and can be instantly edited and regenerated without leaving the Excel environment. Data can be read from Excel sheets by a cell range ("A1:C400") or using an Excel named range. For Excel 2010, 2013, and 2016, 32 and 64 bit. -
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Excel2LaTeX
The Excel add-in for creating LaTeX tables
Making tables in LaTeX can be tedious, especially if some columns are calculated. This converter allows you to write a table in Excel instead, and export the current selection as LaTeX markup which can be pasted into an existing LaTeX document, or exported to a file and included via the \input command. Known to be compatible with Windows Excel 2000–2016 (32-bit and 64-bit) and Mac Excel 2004, 2011, and 2016. May also be compatible with other versions that support .xla add-ins. Does not work... -
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GlycoPAT
Comprehensive, open-source tool for glycoproteomics MS data analysis
...More details are available at https://www.VirtualGlycome.org/glycopat Source code also available at https://github.com/kaichengub/GlycoPAT If you use this software please cite: Gang Liu, Kai Cheng, Chi Y. Lo, Jun Li, Jun Qu and Sriram Neelamegham. " A comprehensive, open-source platform for mass spectrometry based glycoproteomics data analysis", Molecular Cell Proteomics, 2017 Sep 8, in press. https://doi.org/10.1074/mcp.M117.068239 -
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TX-TL modeling toolbox
Modeling and analysis tools for the TX-TL cell-free expression system
This project contains tools for using the TX-TL cell-free expression system. These tools include component models for simulating and analyzing biomolecular circuits, as well tools for composing circuits and creating more complex systems. NOTE: This project has been shifted to GitHub: https://github.com/BuildACell/txtlsim -
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No need to write on the keyboard! Writing texts much faster and easier by talking to the new DocClerk program that converts text files. Dictate your text on your cell phone, translate DocClerk and write your computer. Installation guidelines 1. Download and start DocClerk from your computer. 2. Download and launch the DocCkerk mobile application on your Android smartphone. (soon IOS…) 3. Enter the pairing code Enter the matching code shown in the application on your computer by going to the “Pair” section on the phone. 4. ...
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Utility Cell Map
A Java API that processes a two dimensional array of Strings.
Cell Map - Just a simple java method that processes a two dimensional matrix o cells. Currently it only processes strings but more functionality will be added when the need arises. -
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DimensionalAnalysis
Performs dimensional analysis from cells in a spreadsheet.
...The general convention is to put variable names, values & formulas, and units in three columns. Make sure the names match the contents of the name cells. Use the names in the formulas, not the cell addresses. To use the Dimension Analysis tool, select and copy the cells, then paste them into the tool’s input text box. Requires Python 3 plus SymPy and mpmath packages. http://www.sympy.org http://mpmath.org/ -
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Excel workbook fixer
Some tools to help you fix Excel Workbooks
This workbook contains various tools you can use to fix errors and improve the performance of your Excel workbooks. There are two types of tools – ones which gathers information about your workbook and ones which make changes to your workbook. If a tool makes a change to your workbook, it will add a new sheet to the end of your workbook and call it --CHANGES--. All changes will be listed here. If a tool gathers some information about your workbook, it will add a new sheet to the end... -
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ngx-datatable
A feature-rich yet lightweight data-table crafted for Angular
...Left and Right Column Pinning. Row Detail View. Decoupled theme'ing with included Google Material theme. Light codebase / No external dependencies. AoT Compilation Support. Universal Support. Cell & Row Selection. -
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MOGEN
The software for modeling the 3D structure of a genome using Hi-C data
The software builds 3D models of chromosomes or genome given chromosomal contacts data such as Hi-C, TCC, 5C. MOGEN was tested on simulated datasets. Using real Hi-C data of a human cell line, MOGEN built models that are consistent with knowledge about the genome of the cell line. Detail on how to use it: https://github.com/BDM-Lab/MOGEN It is published in Bioinformatics: http://bioinformatics.oxfordjournals.org/content/32/9/1286 Bioinformatics, Data Mining, Machine Learning (BDM) Laboratory, Jianlin Cheng, PhD Department of Computer Science University of Missouri, Columbia Email: chengji@missouri.edu -
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Telegram Bot API. Receive SMS with Telegram App. Send SMS to the Telegram app from cell phone. Bot will be forwarding all incoming Text messages to your App channel. Telegram API bot Tutorial SendMessage https://www.youtube.com/watch?v=8TIbn3bax8s Facebook messenger bot tutorial: https://www.youtube.com/watch?v=V_ghKTcA39c http://aaronsmith-tech.blogspot.com/2017/04/telegram-bot-receive-sms-telegram-bot.html http://aaronsmith-tech.blogspot.com/2017/05/getupdates-updates-telegram-bot-without.html http://aaronsmith-tech.blogspot.com/2017/04/how-to-create-telegram-bot-without.html
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metasort
A metagenome assembler by reducing microbial community
...Here we present a novel experimental and bioinformatic framework, metaSort, for effective construction of bacterial genomes from metagenomic samples. MetaSort provides a sorted mini-metagenome approach based on flow cytometry and single-cell sequencing methodologies, and employs new computational algorithms to efficiently recover high-quality genomes from the sorted mini-metagenome by the complementary of the original metagenome. Through extensive evaluations on simulated dataset, salivary and gut microbiomes, we demonstrated that metaSort has an excellent and unbiased performance on genome recovery and assembly. -
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JavaMutex
Provides 100% pure Java mutual exclusion.
Freely redistributable open source 100% pure Java for mutual exclusion. Read-write and read-only reentrant lock, condition variable, atomic wraps for Boolean, Integer, Long, and Reference. Cell pool with optional locking, object exchanger, Intersect. -
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TSWeChat
A WeChat alternative. Written in Swift 5
TSWeChat - A WeChat alternative, updated to Swift 5. The cell image in TSChatImageCell is drawn by using a Mask Layer. The chat background can be changed freely so that UI will look perfect. Audio wav files can be automatically converted into amr files which facilitate file transfer to Android devices. Both of the two types of files have been cached.
