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Semtinel is an application framework for the semi-automatic creation, maintenance and analysis of hierarchical concept schemes (thesaurus, classification or ontology). Semtinel supports the development of new analysis methods and visualization techniques
This project aims to be a easy-to-use toolkit of algorithms and utilities for semantic data mining. So far all algorithms are implemented as web services and we provide widgets for their use in the Orange4WS data mining platform.
Free Organic Chemistry Analysis and Visualisation Tool; Chemical formula editor, calculation of threedimensional molecular structures, high-quality realtime rendering, ...
OrthoInspector is a new software system for orthology/paralogy analysis. Its purpose is to facilitate the installation and the maintenance of a database describing orthology/inparalogy relations and to provide tools to exploit these data.
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Audacity AudioMonitor (customized version of of Audacity 1.3-13-b).
Audacity Audio Monitor (customized version of Audacity).
The existing audacity is modified to support following functionality:
- RTSP streaming to fetch the RTP data over UDP and plot the audio stream on the graph.
- HTTP streaming to fetch the mp4 audio data using HTTP and plot the audio stream on the graph.
- Display the tag label information on the graph.Tag information will be written to local disk file.
- Audacity Audio Monitor shall have control buttons embedded in the...
A Matlab toolbox for performing model-free analysis of fMRI data
The mfBox is a Matlab toolbox for performing model-free analysis of multivariate data sets. It also plugs into SPM used for the analysis of multivariate brain recordings such as fMRI, SPECT and PET data sets.
This project is looking for a new maintainer!
This is a c-library that provides tools for advanced
analysis of electrophysiological data. It features
denoising, unsupervised classification, time-frequency
analysis, phase-space analysis, neural networks, time-warping and
more.
This set of scripts is designed to analyze ribosome footprinting and mRNA sequencing reads in the endoplasmic reticulum and cytosol. Its framework may be adapted to other sorts of questions related to sequencing data.
An analysis pipeline for mining exome-Seq and RNA-Seq data, focusing on quality control, SNP identification and annotation, RNA quantification, differentially expressed genes analysis, eqtl, and pathway analysis. http://seqgene.sourceforge.net
Expediting cancer genetic and neurogenetic discovery through Bayesian Network Analysis of microarray data. Designed for genetics researchers, this takes in raw data (and a very small about of user input) and outputs reports usable by biologists.
Scripts to...
(1) format expression data from TCGA (Cancer Genome Atlas) for Cluster 3.0 & Java TreeView (heat mapping).
(2) generate list of potential miRNA clinical biomarkers/signatures based on survival analysis (kaplan-meier curve) statistics.
The Katsura tool overlays microarray gene expression data, proteomics, and similar biological data onto metabolic pathways. [Pathogen Functional Genomics Resource Center (PFGRC) @ J. Craig Venter Institute (JCVI)]
ELIA(Eyegaze Language Integration Analysis) supports the analysis of eye-tracking data for studies in language processing. ELIA eases early analysis of data to enable iterative development of experiments in response to spoken language.
The TIMTAM (Target Information Management Tracking And More) system implements a secure knowledgebase supporting the management, tracking, and analysis of experimental data associated with structural biology projects.
UDAV is program for data arrays visualization based on MathGL library. It support wide spectrum of graphics, simple script language and visual data handling and editing.
Justus is a tool set for Progress 4GL (ABL) Developers. It includes a simplified parser for 4GL, an API to load Profiler data and a Test Coverage Tool.
This RapidMiner-plugin consists of operators for feature selection and classification - mainly on high-dimensional (microarray-) data - and some helper-classes/operators.