Showing 285 open source projects for "coverage"

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  • 1
    A program for CNV detection with whole-genome low-coverage sequencing data. md5 of Increment_Ratio_of_Coverage_V2.0.tar.gz: c8dda5fbd5b43527538f5c410a303a74
    Downloads: 0 This Week
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  • 2
    Stable Baselines

    Stable Baselines

    A fork of OpenAI Baselines, implementations of reinforcement learning

    Stable Baselines is a set of improved implementations of reinforcement learning algorithms based on OpenAI Baselines. You can read a detailed presentation of Stable Baselines in the Medium article. These algorithms will make it easier for the research community and industry to replicate, refine, and identify new ideas, and will create good baselines to build projects on top of. We expect these tools will be used as a base around which new ideas can be added, and as a tool for comparing a new...
    Downloads: 0 This Week
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  • 3
    TexSoup

    TexSoup

    Fault-tolerant Python3 package for searching LaTeX documents

    Navigate, Search, and Modify LaTeX Documents in Python. Easy and reliable: No C extensions, no installation dependencies, and 100% test coverage. TexSoup is a fault-tolerant, Python3 package for searching, navigating, and modifying LaTeX documents. You can skip installation and try TexSoup directly, using the pytwiddle demo.
    Downloads: 0 This Week
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  • 4
    Redux-ORM

    Redux-ORM

    A small, simple and immutable ORM to manage relational data

    A small, simple and immutable ORM to manage relational data in your Redux store. Redux-ORM is fast. All queries are lazily evaluated and come with built-in support for memorization. It provides a clean abstraction over low-level updates, protecting the state from accidental mutations. With nearly 100% branch coverage, the library is thoroughly tested to ensure rock-solid code quality. No matter where your data comes from, Redux-ORM will stay out of its way. Even a custom database layer...
    Downloads: 0 This Week
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    The #1 Embedded Analytics Solution for SaaS Teams.

    Qrvey saves engineering teams time and money with a turnkey multi-tenant solution connecting your data warehouse to your SaaS application.

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  • 5
    VAP464n

    VAP464n

    VAP 4641

    ... Managed Wi-Fi capable for whole-home Wi-Fi coverage and performance • ARRIS ECO Agent™ TR-069 and ARRIS ECO Envoy™ USP (User Services Platform) management clients integrated • Wi-Fi CERTIFIED EasyMesh™ Please note that this project is for distributing, discussing, and supporting the open source software we release. This site does not provide any SDKs or general purpose developer support.
    Downloads: 0 This Week
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  • 6
    A script to filter exome-seq by 1000G, ExAc, dbSNP with minimal coverage and T/N ratio. The script uses the files produced by exome_test.sh. An error is corrected. The script also produces MAF file that only includes variants detected by BOTH GATK and Varscan. A few errors are corrected.
    Downloads: 0 This Week
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  • 7
    Reliable Metrics for Generative Models

    Reliable Metrics for Generative Models

    Code base for the precision, recall, density, and coverage metrics

    ... properties separately. In this paper, we show that even the latest version of the precision and recall (Kynkäänniemi et al., 2019) metrics are not reliable yet. For example, they fail to detect the match between two identical distributions, they are not robust against outliers, and the evaluation hyperparameters are selected arbitrarily. We propose density and coverage metrics that solve the above issues.
    Downloads: 0 This Week
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  • 8
    FeedKit

    FeedKit

    An RSS, Atom and JSON Feed parser written in Swift

    FeedKit is an RSS, Atom and JSON Feed parser written in Swift. Build a URL pointing to an RSS, Atom or JSON Feed. A common scenario in UI environments would be parsing a feed asynchronously from a user-initiated action, such as the touch of a button. Remember, you are responsible for manually bringing the resulting closure to whichever queue is appropriate. Usually to the Main thread, for UI apps, by calling DispatchQueue.main.async. FeedKit adopts Swift 5 Result type, as Result<Feed,...
    Downloads: 0 This Week
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  • 9
    eslint-plugin-node

    eslint-plugin-node

    Additional ESLint's rules for Node.js

    Additional ESLint's rules for Node.js. plugin:node/recommended considers both CommonJS and ES Modules. If "type":"module" field existed in package.json then it considers files as ES Modules. Otherwise it considers files as CommonJS. In addition, it considers *.mjs files as ES Modules and *.cjs files as CommonJS. plugin:node/recommended-module considers all files as ES Modules. plugin:node/recommended-script considers all files as CommonJS.
    Downloads: 0 This Week
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  • 10
    This analytical program LpGsAoH is designed for identification of absence of heterozygosity with low-pass (low-coverage) genome sequencing data. Based on our evaluation, the minimal read-depth for AOH identification is 4-fold. In addition, as the program is designed for low-pass GS, the maximum read-depth is 10-fold. If the read-depth of your data exceed the cutoff, please perform a randomly selection of read/read-pairs to generate a “low-pass” GS for your sample. Pls be noted that this method...
    Downloads: 0 This Week
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  • 11
    OkDownload

    OkDownload

    A reliable, flexible, fast and powerful download engine

    In fact OkDownload is FileDownloader2, which extends all benefits from FileDownloader and beyond. FileDownloader framework is not easy to write unit-test, it is not a testable framework, so it is not stable enough. The core library of FileDownloader is too complex and not pure enough, so 6K+ star 1K+ fork with around 10 PR. Unit test coverage is very high which means reliable. Simpler interface. Task priority support. Uri file to store output-stream. The core library is Pure and light. More...
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  • 12
    Icons8 Line Awesome

    Icons8 Line Awesome

    Replace Font Awesome with modern line icons

    Replace Font Awesome with modern line icons. Swap Font Awesome for modern line icons in one line of code. Line Awesome is a free alternative for Font Awesome 5.11.2. It consists of ~1380 flat icons that offer complete coverage of the main Font Awesome icon set. This icon font is based off of the Icons8 Windows 10 style, which consists of over 4,000 icons, so be sure to check that out if you need more specific icons. The icon can have 3 styles: regular, solid or brand. For each style...
    Downloads: 2 This Week
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  • 13

    TARGT pipeline

    Targeted Analysis of sequence Reads for GenoTyping of HLA/MHC genes

    The 'TARGT' pipeline for Targeted Analysis of sequencing Reads for GenoTyping can be used for genotyping of MHC/HLA genes (or other genomic regions) from ancient and modern shotgun sequence data with moderate to low sequence coverage. The pipeline consists of a main bash script that calls the different steps of the pipeline and can either be called directly or submitted to a cluster queue system, as well as additional sub-scripts and files, that are required to perform the different steps...
    Downloads: 0 This Week
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  • 14
    Gogradle

    Gogradle

    A Gradle Plugin Providing Full Support for Go

    Gogradle is a gradle plugin that provides support for building golang. Gogradle is a Gradle plugin that provide modern build support for Golang. Gogradle is deeply inspired by glide(I need to pay respect for it). You can simply think Gogradle as glide+make. make has a very steep learning curve, thus many people (like me) aren't good at it; Gradle use a DSL with similar syntax to Java to describe a build, which is easier for me. Makefile and Shell have cross-platform issues, especially on...
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  • 15
    React Boilerplate

    React Boilerplate

    A highly scalable, offline-first foundation with the best DX

    React Boilerplate is a highly scalable, offline-first foundation for React.js applications. It offers the best developer experience with a focus on performance and best practices. React Boilerplate offers predictable state management so you can take control of your app’s state and keep state mutations manageable. It also features next generation JavaScript, so you can stop worrying about browser support or use features like arrow functions, JSX syntax and more. There’s also support for...
    Downloads: 0 This Week
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  • 16
    RNASeqBrowser

    RNASeqBrowser

    RNASeqBrowser: A genome browser for strand specific RNAseq reads

    Strand specific RNAseq data is now more common in RNAseq projects. The most widely used visualization tool is the UCSC genome browser that introduced the custom track concept that enabled researchers to simultaneously visualize gene expression at a particular locus from multiple experiments. This paper introduces a visualization tool (RNASeqBrowser) that incorporates and extends the functionality of the UCSC genome browser. For example, RNASeqBrowser simultaneously displays read coverage, SNPs...
    Downloads: 0 This Week
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  • 17

    CAI[N]

    Chromosomal Aberration Identifier [Numerical]

    CAI[N] is a novel computational tool for CNV-karyotyping based on low coverage whole genome sequencing that uses in silico-generated normal karyotypes as a reference to calculate numerical chromosomal aberrations in fixed genomic windows in experimental samples.
    Downloads: 1 This Week
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  • 18
    Gemini

    Gemini

    Utility for regression testing the visual appearance of web pages

    Gemini is a utility for regression testing the visual appearance of web pages. Each of the blocks that are being tested may be in one of the determined states. States are tested with the help of chains of step-by-step actions declared in a block's test suites.
    Downloads: 0 This Week
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  • 19
    Essential React

    Essential React

    A minimal skeleton for building testable React apps using Babel

    A minimal skeleton for building testable React apps using Babel. The design goals are to use fewer tools (no yeoman, gulp, bower, etc...) Babel 6 with Webpack and Hot Loader. Fast testing with mocked-out DOM. Import CSS files as class names. Separate smart and dumb components. No specific implementation of Flux or data fetching patterns. A core philosophy of this skeleton app is to keep the tooling to a minimum. For this reason, you can find all the commands in the scripts section of...
    Downloads: 0 This Week
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  • 20
    Bash Infinity

    Bash Infinity

    A modern standard library / framework / boilerplate for Bash

    ... of code repeat and create a central repository for a well-written, and a well-tested standard library for bash. Bash Infinity transforms the often obfuscated "bash syntax" to a cleaner, more modern syntax. Some components are more sturdy than others, and as-it-stands the framework lacks good test coverage (we need your help!).
    Downloads: 0 This Week
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  • 21
    JBot

    JBot

    Make Slack and Facebook Bots in Java

    JBot is a java framework (inspired by Howdyai's Botkit) to make Slack and Facebook bots in minutes. It provides all the boilerplate code needed so that you can make your bot live right away. Provides you with all the boilerplate code which handles underlying WebSocket connections and other complexities. Supports extra events in addition to all the events supported by Slack/Facebook which makes your work a lot easier. Receiving & sending messages is as easy as defining a @Controller and...
    Downloads: 0 This Week
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  • 22
    mini3d

    mini3d

    3D Software Renderer in 700 Lines

    ... matrices. Implementing Cropping: Simple CVV Cropping. Up to 1024 x 1024 textures. Use the depth buffer to judge the image before and after. Perspective Texture Mapping and Perspective Color Fill. Accurate polygon edge coverage calculation. The rendering engine has only 700 lines, the modules are clear, and the backbone is prominent. Detailed comments, detailed comments on the main code.
    Downloads: 0 This Week
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  • 23
    Express & mongoose REST API Boilerplate

    Express & mongoose REST API Boilerplate

    A boilerplate application for building RESTful APIs Microservice

    A boilerplate application for building RESTful APIs Microservice in Node.js using express and mongoose in ES6 with code coverage and JsonWebToken Authentication. Helps you stay productive by following best practices. Follows Airbnb's Javascript style guide. JavaScript code linting is done using ESLint, a pluggable linter tool for identifying and reporting on patterns in JavaScript. Uses ESLint with eslint-config-Airbnb, which tries to follow the Airbnb JavaScript style guide. Supports code...
    Downloads: 0 This Week
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  • 24

    YFitter

    Fitting Y chromosome haplogroups by maximum likelihood

    Yfitter is a program for assigning Y chromosome haplogroups to individuals sequenced at low coverage. It is designed to be used in a samtools/bcftools pipeline. Yfitter also supports haplogrouping using chip genotype data.
    Downloads: 0 This Week
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  • 25
    cookiecutter-django-rest

    cookiecutter-django-rest

    Build best practiced apis fast with Python3

    You need to make a scalable api on a deadline. You deeply care about the quality of your work. cookiecutter-django-rest takes care of the details so you can focus on making your api awesome. Scaffolding a project takes seconds and it gives you authentication, user accounts, and the docs and tests to support them. Just add your own resources to the api and start shipping. Start off with full test coverage, continuous integration, and continuous deployment. Complete Django Rest Framework...
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