Search Results for "data analysis" - Page 50
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Showing 2195 open source projects for "data analysis"
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MCCCS
Multi Channel Classification and Clustering
Here we present an image-based Multi Channel Classification and Clustering System (MCCCS). It is an generalized, script-based classification system for processing various kinds of image data. Due to the modular design, individual processing-components can be easily adapted, extended or exchanged by own extensions. See project website for installation instructions. -
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Tigris is an open source suite of classes and programs implemented in C++ for single particle electron microscopic image processing.
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CSV Transformer
transforms xml to csv
The CSV Transformer is a data processing tool which transforms .xml-Files to comma separated values. The CSV Transformer was created in a load and performance testing project, the use case was to be able to transform 2800 configuration files of a big banking application to a single .csv-File. With this single file it was possible to compare the whole configuration between two releases with the already available tool CSV Comparator. This enabled the team to verify if there were any... -
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PSGMiner a novel software which has been developed to carry out feature extraction in order that robust analysis and classification of various sleep diseases can be performed using polysomnographic data.The software is composed of different modules: The database, feature extraction, annotation,artifact and machine learning modules. for cite İlhan Umut, PSGMiner: A modular software for polysomnographic analysis, Computers in Biology and Medicine, Volume 73, 1 June 2016, Pages 1-9, ISSN...
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simplest mediadata test
samples to handling multimedia data
This project contains following samples to handling multimedia data: (1) Video pixel data handling program. It contains several examples to handle RGB and YUV data. (2) Audio sample data handling program. It contains several examples to handle PCM data. (3) H.264 stream analysis program. It can parse H.264 bitstream and analysis NALU of stream. (4) AAC stream analysis program. It can parse AAC bitstream and analysis ADTS frame of stream... -
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SOAPfuse
a tool for identifying fusion transcripts from paired-end RNA-Seq data
SOAPfuse is an open source tool developed for genome-wide detection of fusion transcripts from paired-end RNA-Seq data. By comparing with previously released tools, SOAPfuse has a good performance. It is developed in perl, and only be used on linux OS. It requires about 8G memory to run whole analysis. So far, it is developed only for analysis on human being RNA-Seq data. SOAPfuse has been published as Method article in Genome Biology, please check http://genomebiology.com/2013/14/2/R12 The official website (*outdated) of SOAPfuse is http://soap.genomics.org.cn/soapfuse.html The wiki home of SOAPfuse is https://sourceforge.net/p/soapfuse/wiki/Home The GitHub repository of SOAPfuse Perl module is https://github.com/Nobel-Justin/SOAPfuse_PM -
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Savuka-VirtualBox
Virtual Box VDI of SliTaz Linux with Savuka installed and configured
...Point to any data directory, folder name: DATA, select Auto-mount. Note: "Folder name" must be 'DATA' in all caps to link on boot Thats it! More Info: www.osmanbilsel.net www.paulnobrega.net -
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FieldTrip
The MATLAB software toolbox for MEG and EEG analysis
FieldTrip is the Matlab toolbox for EEG and MEG data. It includes algorithms for simple and advanced analysis, such as importing, preprocessing, time-frequency analysis, source reconstruction, statistical testing and connectivity analysis. -
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...MultiTrans is an efficient and accurate multiple testing correction approach for linear mixed models. Our method performs a unique transformation of genotype data to account for genetic relatedness and heritability under linear mixed models, as well as to efficiently utilize the multivariate normal distribution.
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Atlas is a suite of variant analysis tools specializing in the separation of true SNPs and insertions and deletions (indels) from sequencing and mapping errors in Whole Exome Capture Sequecing (WECS) data.
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DVCS-Ripper
Rip web accessible (distributed) version control systems: SVN/GIT/HG
DVCS Ripper is a security and forensics toolkit that reconstructs source code repositories accidentally exposed on web servers. It understands multiple version-control systems—Git, Mercurial, Bazaar, and Subversion—and crawls their metadata directories to rebuild full history where possible. The utilities handle partial or blocked directory listings by guessing object paths and assembling missing pieces from loose files. Investigators and red-teamers use it to demonstrate the risk of... -
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API library call APPA109N.DLL
(retrieving data from Multimeter and sound measurement data)
This library (the DLL), to work with a multimeter APPA-109N through physical or virtual COM port over USB in OS NT/2000/2003/XP/Vista/7/8, designed for querying, reading and decoding data measurements APPA WinDMM100 protocol 95/98 and sound measurement data. DLL provides universal access for other applications, regardless of the language in the environment Win OS. DLL for use in their projects comply with the agreement on stdcall-calls. Type of calling convention is declared after the... -
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REDHORSE
Software suite for the analysis of haploid hybrids using NGS
...REDHORSE is portable and platform independent suite that provides efficient analysis of genetic crosses based on NGS data. -
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SPIW - Scanning Probe Image Wizard
Scanning Probe Image Wizard - MATLAB Toolbox
SPIW is a MATLAB toolbox, for automated processing of scanning probe microscope images. Tools are applicable to all SPM images, but the main focus is on images with atomic or molecular resolution. SPIW is primarily a MATLAB toolbox with functions designed to be called in a user's own script. SPIW also has a very basic GUI for browsing and exporting images. For information on SPIW's performance see our publication ( http://dx.doi.org/10.1063/1.4827076 ) in the Review of Scientific... -
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ncPRO-seq
Non-Coding RNA PROfiling from sRNA-seq
ncPRO-seq is a tool for annotation and profiling of ncRNAs from smallRNA sequencing data. It aims to interrogate and perform detailed analysis on small RNAs derived from annotated non-coding regions in miRBase, piRBase, Rfam and repeatMasker, and regions defined by users. The ncPRO pipeline also has a module to identify regions significantly enriched with short reads that can not be classified as known ncRNA families. ############# Docker version : download and run Dockerfile (go in "Files" section) ############# GitHub : https://github.com/jbrayet/ncpro-seq -
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...NetLogo meets R: Linking agent-based models with a toolbox for their analysis. Environmental Modelling and Software, Volume 25, Issue 8: 972 - 974
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iMSAT represents a full update of the vcf2MSAT program. This command line python program allows for a user to use the polymorphism data generated using SAM- and BAM-tools and a .fasta alignment file to search for polymorphic microsatellite markers (MSATs or STRs). By identifying polymorphic makers, rather than simple repeat regions as previous programs have done, iMSAT greatly increases the speed at which polymorphic MSATs that can be identified -- saving researchers precious time and...
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IM-TORNADO
Illinois Mayo Taxonomy Operations for RNA Database Operations
IM-TORNADO HAS MOVED TO GITHUB: https://github.com/pjeraldo/imtornado2 Pipeline for analysis of paired-end 16S rDNA amplicon data. -
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riboFR-seq
A novel approach to linking 16S rRNA amplicon profiles to metagenomes
16S rRNA amplicon analysis and shotgun metagenome sequencing are two main culture-independent strategies to explore the genetic landscape of various microbial communities. Recently, numerous studies have employed these two approaches together, but downstream data analyses were performed separately, which always generated incongruent or conflict signals on both taxonomic and functional classifications. -
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SampleSpecificDBGenerator
Generates custom UniProt-XML databases from RNA-Seq data
SampleSpecificDBGenerator is a program that takes RNA sequencing data analysis results and translates them into protein database entries that are appended to a UniProt-XML file. This XML is condensed, meaning that much of the extraneous author information in UniProt-XMLs is removed for faster search times in Morpheus. Please cite http://pubs.acs.org/doi/abs/10.1021/acs.jproteome.5b00817. -
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BPandP
Bayesian MCMC algorithms for the analysis of phylogeographic DNA data
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WiiGesture for Fex/AIR
Allows inclusion of Gesture Interaction via WiiMote in Web-Apps
...For research purposes also an analysis tool was developed to compare gestures from different participants/users. We used it to identify intuitive gestures from users for certain commands. The entire work was part of my diploma thesis I wrote in 2008 at Fraunhofer IGD. The gesture recognition API was included in a number of example scenarios. -
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graphnet
AI project using a graph technique on written text.
Experiments using a data sequencing technique on English language sentences. -
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Perl OBD-II Logger
A Perl program for logging OBD-II PID data
The goal of the Perl OBD-II Logger project is to create a flexible and efficient application that can capture and log OBD-II Mode 0x01 PID data from an automotive scantool. It is designed with accurate and efficient PID data logging in mind, and provides NO support for reading or resetting diagnostic trouble codes. By default, the output log file contains time-stamped PID values in a simple Comma Separated Values (CSV) format that can be readily imported into popular data analysis or spreadsheet applications. ... -
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HBS-tools
a set of tools for hairpin bisulfite-seq data analysis
The emerging genome-wide hairpin bisulfite sequencing technique facilitates the determination of DNA methylation fidelity and accurate methylation calling. Here we present HBS analyzer, the first command line based open-source tool to process genome-wide hairpin bisulfite sequencing data. It accepts Illumina paired-end sequencing reads as input, performs alignment to recover the original (pre-bisulfite-converted) DNA sequences and calls methylation status for cytosines on both DNA strands.
