Search Results for "atom" - Page 5
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Showing 245 open source projects for "atom"
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AmberAnalysis
Command-line tools for analyzing Amber Molecular Dynamics simulations.
...Can detect the position of a planar interface between two substances and plot density relative to that interface for atoms of an arbitrary type, name, charge, or residue. Orientation of three-atom residues (such as water) may be calculated and plotted. Uses parallel processing to detect hydrogen bonds, and can produce a bonding profile. Output files can be displayed as graphs using the included matplotlib python graphing script. -
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Vim-Mode
Next generation vim support for atom
vimāmode is an Atom editor package providing modal Vim-style editingācombining the power of traditional Vim keybindings with the extensibility of the Atom editor. Itās now deprecated in favor of vim-mode-plus. Provides Vim modal control for Atom, blending the best of Vim and Atom. Seamlessly integrates with Atom's UI and editing workflows. Easy to install via Atomās package manager. -
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Atom Simplified Chinese Menu
Simplified Chinese localization for Atom's menu, context, settings
This Atom plugin localizes the interface into Simplified Chinese, translating main menus, context menus, and setting dialogs into colloquial style. It provides settings to toggle specific UI parts and supports Windows, macOS, and Linux Atom installs. Though no longer actively updated, it remains useful for Chinese-speaking Atom users. -
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Atom One Dark theme for Terminal
A Terminal theme that mimics the One Dark theme made by the Atom team
A theme for Terminal and iTerm that mimics the native One Dark Theme made by the Atom team. Also available in One Light. Colors are not enabled by default in macOS Terminal, so you will need to enable colors in order for this theme to work. For One Dark, use the same color for "Black" as that used for the window background (#1E2127). Using a brighter text color for the One Dark theme and remove transparency from backgrounds. -
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MoleculeViewer
View 3D molecule structure and plot 2D density map for CRYSTAL program
...Molecule's 3D operations: Left drag : free rotate Right drag : zoom Left drag + CTRL : rotate along X-axis Left drag + SHIF T: rotate along Y-axis Left drag + ALT : rotate along Z-axis Left click : select and deselect atom Right click : select and deselect atom and show selected atom's serial number Doubble click : show all serial numbers Doubble click + CTRL : show molecule's axes When a atom is selected, you can see the distance between the two atoms by moving the mouse over the second atom. -
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MediaWiki Extpack
The collection of extensions for MediaWiki software.
...Ticket Authentication extension provides customizable ticket-based authentication for SSO solutions. The News Channel extension creates customizable automatically updated RSS/Atom news channel for a wiki site. Wikimarkup is automatically converted into HTML. See full descriptions at http://www.mediawiki.org/wiki/User:CodeMonk/MediaWiki_Extensions -
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This is a RSS and Atom feed parser written with Java 1.5
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TomatoRead
RSS Reader for iOS Developers
Tomato reading focuses on selected iOS/OS X developer blogs. -
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Drubuntu
Drubuntu is the easy way to set up an extendable dev server for drupal
Drubuntu is an Ubuntu based mini iso of ubuntu that will automatically set up a Drupal development server for you. You either can extend this server inside a VM and develop your sites in there or even use it as root server that is bridged to windows, So that you don't have to leave your common working environment and can use all your files and settings in Windows while developing a project. -
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orbkit (Moved to Github)
A Modular Python Toolbox for Cross-Platform Post-Processing of Quantum
PLEASE NOTE ORBKIT HAS BEEN MOVED TO https://github.com/orbkit/orbkit orbkit is a parallel Python program package for post-processing wave function data extracted from output files of MOLPRO (Molden File Format), TURBOMOLE (AOMix file format), GAMESS-US, PROAIMS/AIMPAC (wfn/wfx file format), and Gaussian (Output File and Formatted Checkpoint File) output files. Futhermore, an interface to cclib, a parser for quantum chemical logfiles, is provided. If you use orbkit in your work,... -
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Atom Project Viewer
Project Viewer - An Atom's package
An enhanced Atom package to manage project groups within docks, rewritten using Babel and Etch for better Atom integration. It emphasizes lightweight, maintainable code and independent workspace states. -
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Synder
Atom/RSS/SearchSuggestion/OPML processing framework
Synder is an Atom/RSS/SearchSuggestion/OPML processing framework It is Optimized For Android, but works with Java SE/EE. Synder has a small-footprint, low memory consumption. The only dependency for parsing is a SAX2 implementation. -
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CopyAndVerify
Simple gui program to copy a file or dir, verify and save hash
...The executables have been created using pp : it creates an executable similar to an autoextract-zip with the script, the perl engine and all libraries. I'm using it under linux to copy GigaBytes files from ntfs internal hd to ntfs external hd with an old atom eepc with 8.5MB/sec speed : is it good? With more powerful pc speeds are 3 times better. Can manage very long path (>260 char) under windows (under linux is default : magic linux!) in main windows and in primary multi-file-dir selector. -
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Fluid Gravity 3way
there are 3 observers to every curve, each seeing the other 2
I recently dug up some of my old simulations after to my surprise 3SAT and a theoretical expansion of boltzmann statistics reminded me I already simulated something like that but I didnt know how good a simulation it was. Check how the varying density and shape of electron clouds and soliton-like or fluid drop like blobs of field gradually start to point outward and get thinner, like a soliton is bell curve shaped as seen from outside. More importantly, compare the 2 halfs of electron cloud... -
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eSBMTools
python tools for enhanced native structure-based modeling
eSBMTools: python tools that assist the setup and evaluation of native structure-based simulations of proteins and nucleic acids, both at the CĪ± and all-atom level. The tools interface with GROMACS and support its standard output formats. Information from other sources like bioinformatics or experimental data can be added to the standard native structure-based model (SBM). Publication to be cited: Benjamin Lutz, Claude Sinner, Geertje Heuermann, Abhinav Verma, and Alexander Schug. eSBMTools 1.0: enhanced native structure-based modeling tools. ... -
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An open-source software to convert SDF files into TINKER XYZ files (and viceversa) with automatic assignment of MMFF94 atom types, bond types and charges
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Newsbeuter
Newsbeuter is an open-source RSS/Atom feed reader for text terminals
Newsbeuter is an RSS feed reader for the text console. It is designed to run on Unix-like operating systems such as GNU/Linux and FreeBSD. NetBSD is currently not supported, due to technical limitations. -
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RSSamantha
RSS/atom aggregation
RSSamantha is a command line rss/atom feed aggregator/creator written in java. It is designed to subscribe to a batch of feeds in order to merge their items into new feeds and write them as rss 2.0 and/or plain text to harddisk. Additionally it has the ability to download contents of podcastfeeds, filter feed attributes by regular expressions, preprocess the configurationfile for rather unhandy searchterms, requesting channels via HTTP GET and add/remove items from external processes via http POST. -
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Freed
A Simple GTK RSS, ATOM, and RDM feed client.
Use backspace or delete keys to flush the feed item list. Use the space key to reload the freed.xml config. Edit the freed.xml to your liking but make sure to escape the XML characters. -
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X-Dev Linux 1.0
An elegant Ubuntu based Linux distribution for all programmers.
X-Dev Linux is an elegant Ubuntu based Linux distribution easy to use for all kind of programmers. X-Dev Linux has all necessary programms, IDE's preinstalled for programmers to deal with daily tasks without having to look for additional software programs. When you need more applications, IDE's or tools, you can install them through Ubuntu Software Center. X-Dev is developed by considering the requirements of programmers that they face in there daily work. X-Dev is suitable for all... -
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Sismics Reader
Reader is a web-based aggregator of content served by Web Feeds
Reader is an open source, Web-based aggregator of content served by Web Feeds (RSS, Atom). Reader is written in Java, and may be run on any operating system with Java support. -
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I started this project because I wanted a dead-simple blog. One that didn't need a database, used flat text files, and looked nice. It's main advantage is that it only requires PHP 5 and write permissions. There is no setup, just unzip and copy.
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feindura - Flat File CMS
Awesome flat file based CMS
feindura is lightweight flat file based content management system for small and medium websites. It perfect for small websites and pretty! If you new to feindura download the feindura_plus_demoSite.zip file first, to see how it gets implemented! -
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JavaFeedParserCommon
Provides common classes, which can be used to parse news feeds
"JavaFeedParserCommon" is a Java-library, which provides common classes and interfaces, which can be used by projects, which should allow to parse XML-based news feeds, such like RSS- or Atom-feeds.
