Search Results for "data collection algorithm" - Page 37
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Showing 1337 open source projects for "data collection algorithm"
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phenotemp
phenological trends using NOAA AVHRR time series
Starting from GIMMS values as ascii data (each line will be treated as individual time series), the application can smooth the ts - values by applying different algorithm that are based on Fouriertransformation. Separation of seasonal figure as well as the detection of linear trends is possible. Possible breaks in longterm mean can be detected with a change-point analysis using CuSum algorithms. -
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fusie
Fuzzy scala inference engine
Rewriting from Java to Scala and improving my university project on course Artifical Intelligence Systems. About project in russian: http://brunneng.blogspot.com/2013/06/fuzzy-scala-inference-engine-fusie.html Can be used from maven: <dependency> <groupId>net.sf.brunneng.fusie</groupId> <artifactId>fusie</artifactId> <version>0.8.1</version> </dependency> -
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sdEM
Stochastic Discriminative Expectation Maximization (sdEM)
Stochastic discriminative EM (sdEM) is an online-EM-type algorithm for discriminative training of probabilistic generative models belonging to the natural exponential family. In this work, we introduce and justify this algorithm as a stochastic natural gradient descent method, i.e. a method which accounts for the information geometry in the parameter space of the statistical model. We show how this learning algorithm can be used to train probabilistic generative models by minimizing different discriminative loss functions, such as the negative conditional log-likelihood and the Hinge loss. ... -
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CWIS
Assemble, organize, & share collections of data about online resources
The Collection Workflow Integration System (CWIS, pronounced SEE-wis) is a free, open source software package designed to help assemble, organize, and share information about resources online. The software conforms to international and academic standards for metadata while providing turnkey setup and a user-friendly interface, allowing resource collection developers (and end users) to focus on what they want to share (or find) without worrying about the technical details. CWIS provides... -
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ImpraStorage
ImpraStorage provided a private imap access to store large files
ImpraStorage provided a private imap access to store large files. Each file stored on the server is split in severals random parts. Each part also contains random noise data (lenght depends on a crypt key) to ensure privacy and exclude easy merge without the corresponding key. An index of files stored is encrypt (with the symmetric-key algorithm Kirmah) and regularly updated. Once decrypt, it permit to perform search on the server and download each part. transfert process is transparent. Just vizualize locally the index of stored files and simply select files to download or upload. ... -
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Tomasulo Simulation
Tomasulo algorithm Simulation
Tomasulo algorithm Simulation implemented on C# Winforms with VS 2008. Includes test data and config files. -
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iOVFDT
iOVFDT algorithm of incremental decision tree
How to extract meaningful information from big data has been a popular open problem. Decision tree, which has a high degree of knowledge interpretation, has been favored in many real world applications. However noisy values commonly exist in high-speed data streams, e.g. real-time online data feeds that are prone to interference. When processing big data, it is hard to implement pre-processing and sampling in full batches. -
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CodeSounding is a sonification framework which makes possible to hear how any existing Java program "sounds like", by assigning instruments and pitches to code statements (if, for, etc) so that the flowing of execution is played as a flow of music.
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Open Door Logistics
Open source software for territory design
.... - Automatically optimise territories using a powerful algorithm. - Generate sophisticated PDF reports. -
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VariantMaster
Extract causative variants for monogenic and sporadic genetic diseases
There is a fast growing interest in clinical genetics to the utilization of High Throughput Sequencing data for accurate diagnosis of monogenic diseases. To improve the identification of the variants from HTS, we developed VariantMaster, an original program that accurately and efficiently extracts causative variants in familial and sporadic genetic diseases. The algorithm takes into account predicted variants (SNPs and indels) in affected individuals or tumor samples and utilizes the row (BAM) data to robustly estimate the conditional probability of segregation in a family, as well as the probability of it being de novo or somatic. ... -
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TriageTools
Tools for partitioning and prioritizing fastq data
TriageTools is a collection of tools for partitioning raw data (fastq reads) from high-throughput sequencing projects. The tools are designed for basic data management as well for prioritizing analysis of certain subsets. The project wiki contains usage information. -
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mod DNA-Based Installer (modDNA)
An attempt to speed up installing large mod configs such as S.T.E.P.
Mod Organizer (MO) provides a very solid way of installing mods. Skyrim Total Enhancement Project (S.T.E.P.) provides a very good collection of mods. Still, installing large collections (such as S.T.E.P.) takes many hours, mostly of menial and error-prone keypressing and mouseclicking, The aim of modDNA is to eventually speed it up to the point of "download 'DNA' developed by guru", then "download files necessary to reconstruct this DNA" (with modDNA providing hints for download), and... -
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StabLe
An algorithm for learning stable graphical models from data
Stable Graphical Model Learning (StabLe) is an algorithm for learning the structure and parameters of stable graphical (SG) models from data. Stable random variables are motivated by the central limit theorem for densities with (potentially) unbounded variance and can be thought of as natural generalizations of the Gaussian distribution to skewed and heavy-tailed phenomenon. SG models are multi-variate stable distributions that represent Bayesian networks whose edges encode linear dependencies amongst random variables. ... -
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cmotif
A method for mining conditional phosphorylation motifs
...Although several algorithms have been proposed to uncover phosphorylation motifs, the problem of efficiently discovering a set of significant motifs with sufficiently high coverage and non-redundancy still remains unsolved. In this paper, we propose an algorithm called C-Motif for a non-redundant identification of significant phosphorylation motifs. In tests with real data including both non-kinase-specific and kinase-specific phosphorylation data, the C-Motif algorithm successfully reports a relatively complete set of of conditional phosphorylation motifs efficiently. -
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libcontc
Container library in C.
About Collection of data structures and operations that have been (and will continue to be) implemented in response to need. Container interface, naming and behavior is similar to the STL containers. Algorithm interface is in the spirit of the C standard library search and sort functions. Compatibility ISO C99, ISO C++98, ISO C++11. Performance These are designed to be general purpose, and reasonably efficient in most circumstances. -
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Front end Interview Questions
Help the front End community to rock interview
Interview questions for front-end developers. Only for JS developers when they have to answer some side questions to make the interviewer comfortable. To rock the interview to achieve what you deserve and to improve your concepts about front-end technologies, I have consolidated a list of questions and answers. It's a one-stop solution for front end interview process. HTML might be the heart of a website, but least utilized and explored. js dude followed the same path and put some basic... -
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Pepgrep
Tool for peptide MS2 pattern matching in MS tandem dataset
pepgrep offers a quick and friendly way to examine MS tandem output data by finding a spectral pattern matching selected peptide sequence. It is database-free command-line utility that uses Peptide-to-MS2 scoring algorithm. The Peptide-to-MS2 pattern matching can accumulate dozens of mass offsets corresponding to a variety of Post-Translational Modifications. Decoy peptide sequences are used with the tested peptide sequence to reduce false-positive results. -
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Graphal
Graph algorithms interpreter, IDE, debugger, 3D visualizations.
Graphal is an interpreter of a programming language that is mainly oriented to graph algorithms. There is a command line interpreter and a graphical integrated development environment. The IDE contains text editor for programmers, compilation and script output, advanced debugger and visualization window. The progress of the interpreted and debugged graph algorithm can be displayed in 3D scene. -
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SAWA calculates a semantic similarity coefficient between two sentences. Coefficient is expressed between "0" and "1", where: 0 means there is not semantic similarity among them; 1 vice versa.
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PythonStatsLab
A collection of useful statistical functions written in Python
...New functionality I wish to add are hypothesis testing and calculation of p-value, type I & II errors, etc. These functions would come in handy to anyone taking introductory or intermediate-level courses in probability, statistics and data analysis. There are several numerical integration techniques (Riemann sum, Simpson's method, Taylor expansion, etc.) that can be employed in this task, which I hope to add soon. Projected Future Improvements: -Estimation with 2 means -Student's t-distribution -Hart's algorithm for integrating CDF -
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octave-ms
Collection of routines for manipulation with mass spectrometry data
octave-ms is a collection of IO routines for manipulation with mass spectrometry datasets for octave users. It can handle variety of MS storage file formats including MGF, DTA, PKL, MZXML, MZDATA and MZML, converts MS data from one format to another, extract scans from MS datasets. Combined with octave statistical packages, it can be easy implemented to perform stat tests on various parameters of spectrum. -
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AS-peak
ASPeak: an abundance sensitive peak detection algorithm for RIP-Seq
Unlike DNA, RNA abundances can vary over several orders of magnitude. Thus identification of RNA-protein binding sites from high throughput sequencing data presents unique challenges. While peak identification in CHIP-Seq data has been extensively explored, there are few bioinformatics tools tailored to peak calling on the analogous datasets for RNA-binding proteins. Here we describe ASPeak, an implementation of an algorithm that we previously applied to detect peaks in Exon Junction Complex (EJC) RNA immunoprecipitation in tandem (RIPiT) experiments. ... -
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ProximityForest
Efficient Approximate Nearest Neighbors for General Metric Spaces
A proximity forest is a data structure that allows for efficient computation of approximate nearest neighbors of arbitrary data elements in a metric space. See: O'Hara and Draper, "Are You Using the Right Approximate Nearest Neighbor Algorithm?", WACV 2013 (best student paper award). One application of a ProximityForest is given in the following CVPR publication: Stephen O'Hara and Bruce A. -
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Linux Guist - Multi Lingual OS for Asia
A Single Click Language Changer and Publishing System for Web and DTP
Linux Guist - is a Multi Lingual Live CD OS for most Asian Languages, with the ability to run of a CD & Old Hardware, with just 128 MB Memory, for DTP, Web Publishing & Data Entry purposes. This will help IT employers to take up Govt. Projects that require Data Collection, Entry & Publishing at a very very low cost, while providing Training & Job Opportunities to numerous students of these languages, in the various towns, of the country. Talk to your respective IT/HRD ministry to identify projects as well as Towns that have more Unemployed youths, to make a Difference in their Lives ! ... -
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Glitch Avatars
Art and source for Glitch's customizable avatars
glitch-avatars is a collection of art assets, animation, and source code for the customizable avatar system used in the MMO game Glitch by Tiny Speck. It includes illustrations, animation frames, and data that describe avatar features, enabling avatars to be customized in clothing, appearance, and animations. It was released as part of Tiny Speck’s effort to preserve the game’s assets when the game shut down.