Search Results for "databases" - Page 32
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Showing 1797 open source projects for "databases"
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GAPE
proteogenomic analysis software
GAPE is a one-stop proteogenomic informatics software that provides a multifaceted and standard workflow against eukaryotes in proteogenomic data-analysis cycle for genome refinement and global identification of PTM events. This software allows concurrent querying of proteomic and genomic databases to refining the genome and proteome annotations comprehensively. This includes MS data and database construction, database searches, FDR calculations, statistical result integration, validation of annotated genes, identification of previously unidentified genes, protein level identification of alternative spliced variants and SAAV, biological interpretation, and global PTM discovery. -
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DataScienceR
a curated list of R tutorials for Data Science, NLP
...Many of the modules demonstrate best practices in R, such as using the tidyverse, R Markdown, modular scripting, and reproducible workflows. The repository also shows examples of linking R with external resources — APIs, databases, and file formats — and integrating into larger pipelines. It acts as a learning scaffold for students or beginners transitioning to more advanced data science work in R, offering a hands-on, example-driven approach. The structure encourages modularity, readability, and reproducible practices, making it a useful reference repository for learners and educators alike. -
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WikiSQL
A large annotated semantic parsing corpus for developing NL interfaces
A large crowd-sourced dataset for developing natural language interfaces for relational databases. WikiSQL is the dataset released along with our work Seq2SQL: Generating Structured Queries from Natural Language using Reinforcement Learning. Regarding tokenization and Stanza, when WikiSQL was written 3-years ago, it relied on Stanza, a CoreNLP python wrapper that has since been deprecated. If you'd still like to use the tokenizer, please use the docker image. -
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nervalreports
A lightweight report creation Java library
...Instead of the highly expensive way of well-known engines like Jasper Reports, where performance and data reiteration is a big and set aside problem (and also is the report design as a non-programming task), at Nerval Reports the data should be sent directly when iterating through it (ie: when using databases, one will create its report while iterating through the result set - instead of creating a bunch of collections to pass them to the library), and the design is mainly focused on programmer side. Also, one could include to its project just the exporters he/she is interested with, basing its choice on performance trade-offs, report file types and focused target projects. -
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Graph Portal
Software to build web portals using concepts of Graph Theory
Graph Portal allows to organize many types of data so that you can get the information you want in the easiest way possible. There are many use cases for this software, including: building a web portal, creating mind map, wiki, studying graph theory concepts and algorithms,content management etc. The application has built-in Lucene search, custom query, file attachment to nodes etc. Graph Portal comes with an optional built-in security for authentication and role-based... -
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Collabtive
Collabtive is web based project management software
Collabtive is a web‑based, open‑source project management tool that serves as a lightweight alternative to proprietary solutions like Basecamp. Built with PHP/JavaScript and supporting MySQL/MariaDB or SQLite, it’s targeted at small to mid‑sized teams and freelancers. With a modern responsive UI, it provides core features like task tracking, time logging, file management, and multilingual support. -
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HTMLdb
Small Database Management System
A PHP system for the management of small databases for the web. http://phpmyolap.altervista.org/htmldb/ -
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MetExpert is an expert system to assist users with limited expertise in informatics to interpret GCMS data for metabolite identification without querying spectral databases
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Flasky
Companion code to my O'Reilly book "Flask Web Development"
...It serves as both a tutorial and sample codebase that walks developers through building a full-featured web application, including user registration and login, role-based permissions, user profiles, and content creation. The project shows how to organize a Flask application into reusable blueprints, configure environment-specific settings, integrate SQL databases via SQLAlchemy, and manage migrations. Beyond the core web functionality, Flasky illustrates testing strategies using Python’s unittest framework, including tests for models, views, and authentication flows to promote test-driven development. -
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Pure-Tcl Interface to PostgreSQL
A Tcl interface to PostgreSQL databases, written in Tcl
pgintcl is a Tcl interface to the PostgreSQL database system, written entirely in Tcl. It is mostly compatible with other pgtcl implementations, especially pgtclng. It lacks asynchronous operations, and is somewhat slower, but it does not require any other libraries. (This project was on pgfoundry.org and its predecessor from Feb 2003 through Mar 2011.) -
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This project provides tools or modules, including - syncdb: Java application which transfers a result of a query to the table located in remote databases - dblink_plus: PostgreSQL module which supports connections to other databases. - pgsql_fdw: Foreign-data wrapper for external PostgreSQL servers. This can be installed on only 9.1. - Foreign-data wrapper for external Oracle servers. This can be installed on only 9.1. This is just "a yet another implementation" for widely used and distributed at PGXN. --------------------- 2015.7.31 Now, we have moved to GitHub. ...
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CrNiCKL
CrNiCKL (chronicle) is a Java database for time series
CrNiCKL (pronounced "chronicle") is a data manager written in Java handling large sets of heterogeneous time series. A simple schema system allows to confiture value types and time domains. CrNiCKL runs on top of SQL or NoSQL databases. Drivers for JDBC and MongoDB are available. -
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movesDB
JDBC Drivers for MS Excel and MS Access
A read-only JDBC driver for MS Excel and MS Access databases. -
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JabRef
JabRef is a graphical application for managing bibliographical data
JabRef is a graphical application for managing bibliographical databases. JabRef is designed specifically for BibTeX bases, but can import and export many other bibliographic formats. JabRef runs on all platforms and requires Java 1.8 or newer. -
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Haxl
Haskell library that simplifies access to remote data
Haxl is a Haskell library that simplifies access to remote data, such as databases or web-based services. Haxl can automatically batch multiple requests to the same data source, request data from multiple data sources concurrently, cache previous requests, and memoize computations. Having all this handled for you behind the scenes means that your data-fetching code can be much cleaner and clearer than it would otherwise be if it had to worry about optimizing data-fetching. -
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AccessConverter
A Microsoft Access database conversion tool to convert old and new Acc
A Microsoft Access database conversion tool to convert old and new Access database formats to some other popular SQL based databases and formats. It is built with Jackess, a Java library for reading and writing MS Access databases. It supports Access 97 and all versions 2000-2013. Online Application An online application that uses AccessConverter to convert databases can be found here https://lytrax.io/blog/tools/access-converter. Dependencies JDK 1.8 Apache Commons IO 2.5 (commons-io-2.5) Apache Commons Lang 2.6 (commons-lang-2.6) Apache Commons Lang 3.6 (commons-lang3-3.6) Apache Commons Logging 1.2 (commons-logging-1.2) SQLite JDBC Driver 3.18.0 (sqlite-jdbc-3.18.0) JSR 353 (JSON Processing) 1.0.2 (javax.json-1.0.2) Jackcess 2.1.8 (jackcess-2.1.8) -
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The Autshumato terminology management system (TMS) is a web application that facilitates the management and development of searchable terminology databases that contain terminology in different languages.
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HTSFinder
High-Throughput DNA Signature Finder
...This pipeline generates all the possibilities of k-mers for every genome individually and then determines their frequency in the entire database. Finally, DNA signatures of every species or strain are obtained in the database or multiple databases that have been involved in the pipeline. HTSFinder implements the parallel and distributed computational tool Hadoop for the second and third phases. -
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EnterAccess
Full JAVA JDBC Interface to MS Access using Jackcess
This JDBC interface serves as a full JAVA interface to MS Access files. It was developed to support the Software-Independent Archival of Relational Databases (SIARD) of the Swiss Federal Institute. It is based on the project Jackcess for accessing MS Access files and makes use of the project H2 for parsing SQL. It is an alternative to the JDBC interface UCanAccess, whose metadata and type support and very limited SQL for DDL and DML queries could not be adapted for the purposes of SIARD. ... -
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DataCleaner
Data quality analysis, profiling, cleansing, duplicate detection +more
DataCleaner is a data quality analysis application and a solution platform for DQ solutions. It's core is a strong data profiling engine, which is extensible and thereby adds data cleansing, transformations, enrichment, deduplication, matching and merging. Website: http://datacleaner.github.io -
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VFront
VFront is a dynamic front-end for MySQL, PostgreSQL and SQLite DBs.
VFront is a dynamic front-end for MySQL, PostgreSQL and SQLite databases written in PHP and Javascript. With VFront you can create forms for manage data in AJAX style, rules and privileges for differents groups, reports ,statistics and much more. Please note that the project, with the latests updates, has moved on Github: https://github.com/marciuz/vfront/ -
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This R package combines biological information (expression data) with theoretical information (miRNA target prediction databases) in order to obtain a curated list of potential miRNA-mRNA interaction pairs.
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FileToDB is generic data Import tool for all databases. -You can Import data from CSV or Delimited Files to any database you have odbc or native drivers. -Execute directly to database or export sql file. -Save import config to ini file -Autoload last config from ini file -Header parse -Boom check -Ignores empty lines -Ingores special chars -Buttons for Execute stored procedure before and after import processes -tested for mysql, mssql -supports all databases...
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Adele
Adhoc Data Exploration - Live & Easy
...Adele runs without installation from USB stick for Windows, Linux and MacOSX. Last added changes: - data science tools (V1, IQR) - export to remote and desktop databases (mysql,sqlite, ms access) - internet features for emails and domains
