Search Results for "r programming" - Page 3
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Showing 81 open source projects for "r programming"
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CSBB-v2.1 [CSBB-v3.0 is now available]
Computational Suite For Bioinformaticians and Biologists
CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R, java and ruby in background for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the need to write programming code. CSBB is currently available on Linux, UNIX and Windows platforms. Currently CSBB provides 17 modules focused on analytical tasks like normalization, visualization, statistics, RNA-SEQ etc. -
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CSBB-v3.0
CSBB - Computational Suite for Bioinformaticians and Biologists
CSBB is a command line-based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R, java, python and ruby in background for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the need to write programming code. CSBB is currently available on Linux, UNIX. Currently CSBB provides 18 modules focused on analytical tasks like performing upper-quantile normalization, interactive visualization and next generation sequencing pipelines. ... -
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DataScienceR
a curated list of R tutorials for Data Science, NLP
The DataScienceR repository is a curated collection of tutorials, sample code, and project templates for learning data science using the R programming language. It includes an assortment of exercises, sample datasets, and instructional code that cover the core steps of a data science project: data ingestion, cleaning, exploratory analysis, modeling, evaluation, and visualization. Many of the modules demonstrate best practices in R, such as using the tidyverse, R Markdown, modular scripting, and reproducible workflows. ... -
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This application allow user to predict dissolution profile of solid dispersion systems based on algorithms like symbolic regression, deep neural networks, random forests or generalized boosted models. Those techniques can be combined to create expert system. Application was created as a part of project K/DSC/004290 subsidy for young researchers from Polish Ministry of Higher Education.
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XPL PDP-10
XPL compiler for the PDP-10
This is an XPL compiler for the PDP-10 written by Richard L. Brisbey II and R. H. Hey in the mid 70's. This compiler was released into the public domain through DECUS. This source repository includes all the source and text files from the original DECUS release tape plus a port of the compiler that will run on more modern computers. The compiler port requires 64-bit hardware which is used to emulate the 36-bit data word of the PDP-10. -
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H2O-3
H2O is an Open Source, Distributed, Fast & Scalable Machine Learning
...It supports many machine learning algorithms including generalized linear models, gradient boosting machines, deep learning networks, and ensemble techniques. The platform provides interfaces for multiple programming languages such as Python, R, Java, and Scala, making it accessible to a wide range of developers and data scientists. H2O-3 integrates with big data technologies such as Hadoop and Apache Spark, enabling organizations to run machine learning workflows on large-scale data infrastructure. The platform also includes a web-based interface called Flow that allows users to build models interactively through notebooks and visual tools. -
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CSBB-v2.0
Computational Suite for Bioinformaticians and Biologists
CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R, java and ruby in background for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the need to write programming code. CSBB is currently available on Linux, UNIX and Windows platforms. Currently CSBB provides 16 modules focused on analytical tasks like normalization, visualization, statistics, RNA-SEQ etc. -
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(RoboSim) Robot Simulator
(RoboSim) Java based Robot Localization and Path Planner Simulator.
Java based portable simulator to visualize and understand the Robot Localization, Path planning, Path Smoothing and PID controller concepts. It is very flexible and easy to use. It supports multiple platforms. The source code is available on Github where you can find latest development and up-to-date documentation. Source : https://github.com/habsoft/robosim Blog : https://robosimblog.wordpress.com Note : Use jre 1.7 to run it. 1.Histogram Filter 2.Histogram Filter with Sonar... -
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Mastering Shiny
Mastering Shiny: a book
Mastering Shiny is a book (and its accompanying source repository) by Hadley Wickham that teaches people how to build interactive web applications using Shiny in R. It starts from basics (your first app, UI components, reactivity) and progresses to more advanced topics (dynamic UIs, modules, testing, security, performance). It is intended to help data scientists, analysts, or R users who may not have deep experience in web technologies become expert Shiny developers. The source code is open,... -
MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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Data Science Specialization
Course materials for the Data Science Specialization on Coursera
...The repository is designed as a shared space for code examples, datasets, and instructional materials, helping learners follow along with lectures and assignments. It spans essential topics such as R programming, data cleaning, exploratory data analysis, statistical inference, regression models, machine learning, and practical data science projects. By providing centralized resources, the repo makes it easier for students to practice concepts and replicate examples from the curriculum. It also offers a structured view of how multiple disciplines—programming, statistics, and applied data analysis—come together in a professional workflow. -
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Adamanborg
Adamanborg is evolved cybernetic organism with Ada.
Help: Adamanborg [ Options [ Parameters ] ] Help: Options : -F : Configuration filename => Wide_String -h : print this message => -q : quiet option => -x : running under X window system => -v : print the version => -o : running under textual 80x25 mode => -w : running under textual 160x64 mode => -W : running under textual 211x78 mode => -f : train filename for L1 => Wide_String -r : network filename for L1 => Wide_String -R : network filename for L2 => Wide_String -l : lexic filename => Wide_String -m : max epochs for L1 => Positive -M : max epochs for L2 => Positive -c : converged for L1 => Real -C : converged for L2 => Real -i : max iteration for L1 => Positive -n : initialize network for L1 => -N : initialize network for L2 => -U : univers filename => Wide_String -s : max samples for L1 => Positive -S : max samples for L2 => Positive -e : user name => Wide_String -H : hostname => Wide_String -P : Self programming process => -p : load manpages -
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HeatmapGenerator is a graphical user interface software program written in C++, R, and OpenGL to create customized gene expression heatmaps from RNA-seq and microarray data in medical research. HeatmapGenerator can also be used to make heatmaps in a variety of other non-medical fields. HeatmapGenerator is peer-reviewed published software (http://www.scfbm.org/content/9/1/30). Please cite: [Khomtchouk et al.: "HeatmapGenerator: High performance RNAseq and microarray visualization...
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Hibersap
A Java library to communicate with SAP
...It defines a set of Java annotations to map SAP function modules to Java classes as well as a small, clean API to execute these function modules and handle transaction and security aspects. Hibersap's programming model is quite similar to those of modern O/R mappers, significantly speeding up the development of SAP interfaces and making it much more fun to write the integration code. Under the hood, Hibersap either uses the SAP Java Connector (JCo) or a JCA compatible resource adapter to communicate with the SAP backend. While retaining the benefits of JCo and JCA like transactions, security, connection pooling, etc., developers can focus on writing business logic because the need for boilerplate code is largely reduced. -
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SGUI
A simple, small, cross platform GUI library in plain C89
SGUI is a small, simple, cross platform GUI library written in plain C89. It has a set of widgets, dialogs and supports OpenGL and Direct3D context creation, also including embedded rendering widgets within a window. SGUI has so far been successfully tested on various GNU/Linux distros on x86 and x86_64, as well as Windose operating systems from Windows 98 up to Windows 7. -
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TeachingDemos
Bioinformatics related demos and tutorials using the R programming lan
Bioinformatics related demos and tutorials using the R programming language for large biological data. Licence: Creative Commons Attribution-NonCommercial 4.0 International License -
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ProgrammingAssignment2
Repository for Programming Assignment 2 for R Programming on Coursera
This repository contains the second programming assignment for an R course, focused on caching expensive computations by leveraging R’s scoping rules. The assignment walks you through creating a special matrix object that stores both a matrix and its cached inverse, avoiding repeated calls to costly operations. It builds on a worked example that caches the mean of a numeric vector, demonstrating how the operator preserves state across function calls. -
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PANDA
Passing Attributes between Networks for Data Assimilation
...PANDA integrates multiple sources of biological data, including protein-protein interaction, gene expression, and sequence motif information, in order to reconstruct genome-wide, condition-specific regulatory networks. PANDA is also available in other programming languages, including: MATLAB/Octave: (1) https://drive.google.com/a/channing.harvard.edu/file/d/0BwVdzX3nIj6RamtmNVdKYVk1N2c/view?usp=sharing (2) https://github.com/QuackenbushLab/matlab-panda Python: (1) https://github.com/davidvi/pypanda (2) https://github.com/QuackenbushLab/pypanda Bioconductor/R: http://www.bioconductor.org/packages/devel/bioc/html/pandaR.html For more information please see: https://sites.google.com/a/channing.harvard.edu/kimberlyglass/tools/panda or email kimberly dot glass at channing dot harvard dot edu -
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...This pre-filtering may increase the speed by one to two orders of magnitude. CITATION: Wang, Q., Quensen, J. F., Fish, J. A., Lee, T. K., Sun, Y., Tiedje, J. M., and Cole, J. R. 2013. Ecological patterns of nifH genes in four terrestrial climatic zones explored with targeted metagenomics using FrameBot, a new informatics tool. mBio 4:e00592-13.
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Very small and dynamic console typing tutor that starts and ends as a programming project after reading The C Programming Language by K&R.
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DiaT
DiaT is a Textadventure
DiaT stands for: Diat is a Textadventure - but its even more, Its an emulator for playing and creating Textadventures like back in the 80s. Its written in Java. It's a program that reads data from a human-readable xml file to create a text-based game, allowing people unfamiliar with programming to craft their own customized text adventures. Sounds and graphics can also be added. -
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RCourse
RCourse - a robustness benchmarking suite for publish/subscribe
...All parts (simulation, analysis, diagram creation) make use of free software. The simulation results are stored in a SQLite database file and the analysis as well as diagram creation is done with the R programming language. -
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AVRILOS
Simple AVR OS
A simple Embedded System Framework that allows rapid development of applications build for AVR family. System is based on a super-loop architecture with check and skip (no-wait) flag event driver system. Supports: UART, SysTick Timer, ADC, SPI, EEPROM, PWM. Also supports: Xilinx FPGA configuration, FPGA SSI interface, smart card reader etc. Tested partially (different modules in each case) on ATMega163/16/32/323/8. Awards CodeProject 2010, Third Prize, Hardware and Device... -
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Little but very fast and powerful easy to implement PHP web engine. Target: make web programming more comfort and easy for beginers.
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Protein ALignment Optimiser (PALO) is a script for the selection and alignment of the best combination of transcripts among orthologous genes. PALO is mainly written in Python, although other programming languages are also implemented (R, Perl...).
