Search Results for "java expression evaluator" - Page 3
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Showing 268 open source projects for "java expression evaluator"
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1
MorganaXProc (Implements XProc 1.0)
A Java implementation of XProc: An XML Pipeline Language
This project is now abandoned in favour of MorganaXProc-III which implements XProc 3.0: https://sourceforge.net/projects/morganaxproc-iiise/ MorganaXProc is a full implementation of XProc: An XML Pipeline Language (W3C Recommendation 11 May 2010) written in Java, supporting all required and optional steps, the steps proposed on EXProc.org and also the document templating steps "p:in-scope-names" and "p:template". XPath 2.0 or XPath 3.0 is used as expression language. XSLT and XQuery are supported out of the box, while a flexible connector mechanism also allows to employ your favorite XSLT and XQuery processors. ... -
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DACO-algorithm
A novel transcription factor complex prediction algorithm.
Eukaryotic gene expression is controlled through molecular logic circuits that combine regulatory signals of many different factors. Complexation of transcription factors and other regulatory proteins is a prevailing and highly conserved mechanism of signal integration within critical regulatory pathways and enable to infer controlled genes as well as the exerted regulatory mechanism. We developed DACO (domain-aware cohesiveness optimization), a novel algorithm that combines... -
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mep4j
Math Expression Parser 4 Java
Math Expression Parser 4 Java MEP4J is a high performance math expression strings parser for Java (J2SE >= 5). Compare its performance against similiar libraries and let me know your experince. The library manages the 5 operators (+, -, /, %, *) together with the following functions: - "abs" - "cos" - "sin" - "acos" - "asin" - "cosh" - "sinh" - "tan", - "tanh" - "atan" - "sqrt" - "cbrt" - "root" - "log" - "log10" - "log1p" - "exp" - "expm1" - "atan2" - "pow" The library supports variables (case insensitive), custom and pre-loaded ("e" and "pi"). ... -
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CSBB-v2.1 [CSBB-v3.0 is now available]
Computational Suite For Bioinformaticians and Biologists
CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R, java and ruby in background for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the need to write programming code. CSBB is currently available on Linux, UNIX and... -
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Information Extraction from Arabic Text
Java based framework for extraction information from Arabic text
This project presents a model a for extracting information from Arabic text. The project executables include three Java based modules that can be used to implement a rule-based information extraction process from Arabic text. These modules are: 1-A module for annotating a selected Arabic text file using a custom morpho-syntactic Part-of-Speech tagging scheme. 2-A module that can be used along with Protégé for establishing Ontology Web Language (OWL) based ontologies based on... -
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CSBB-v3.0
CSBB - Computational Suite for Bioinformaticians and Biologists
CSBB is a command line-based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R, java, python and ruby in background for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the need to write programming code. CSBB is currently available on Linux,... -
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PIP
Useful crossplatform library for distributed systems
Platform-Independent Primitives. Contain string, thread, timer, file, config file, serial port, ethernet (UDP, TCP, broadcast, multicast), protocol, multiprotocol, peer, console, variable, struct, evaluator, system monitor (Linux only), CLI (command-line interface) parser. Package include library that you can build with 'qmake' or 'CMake' and test program in 'main.cpp'. Online documentation: http://ppip.sourceforge.net/doc/ -
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HiBeaver
HiBeaver is a gradle plugin for java byte code manipulation and AOP
HiBeaver is a gradle plugin for java byte code manipulation and AOP design by modifying project byte code during build of the package, or modifying byte code within Jar independently. Combined with the powerful Java ASM bytecode modification tool and Gradle Transform API, HiBeaver can modify the Java bytecode contained in the project according to the user's configuration during the Android application compilation stage, so that users can only use Gradle Configure code injection and AOP... -
9
MOIRAI
Simple Scientific Workflow System for CAGE Analysis
Cap analysis of gene expression (CAGE) is a sequencing based technology to capture the 5’ ends of RNAs in a biological sample. After mapping, a CAGE peak on the genome indicates the position of an active transcriptional start site (TSS) and the number of reads correspond to its expression level. CAGE is prominently used in both the FANTOM and ENCODE project. MOIRAI is a compact yet flexible workflow system designed to carry out the main steps in data processing and analysis of CAGE data.... -
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Binary Stream Editor
A stream editor in java that can handle text/binary formats
A stream editor that can be invoked by another java program or also the command line. It can handle binary data too. Unlike newline based programs like sed, it allows different ways of reading the stream through the traverser, buffer and commands interfaces. A traverser decides how the data is read. This data is stored in the buffer. The commands decide what to do with this data. All data is handled as characters, by specifying an encoding. For binary data, the encoding ISO-8859-1 is used... -
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IGSA
Individual Gene Sets Analysis
IGSA (Individual Gene Sets Analysis) is an application software based on Java and R that leverages a powerful analytical capacity. It can be used for gene sets enrichment and samples clustering. In gene sets enrichment, IGSA takes account of the heterogeneity of genes expression in samples and the homogeneity at the functional level, trying to pick out more particular and more significant gene sets. In sample clustering, IGSA clusters the samples based on the significant pathways rather than genes. ... -
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CSBB-v2.0
Computational Suite for Bioinformaticians and Biologists
CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R, java and ruby in background for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the need to write programming code. CSBB is currently available on Linux, UNIX and... -
13
CalclipseMath
Java math expression parser and script interpreter
CalclipseMath – CalM for short – is a math parser written in Java. With a few lines of code CalM enables your application to evaluate user-supplied mathematical expressions, such as "e^(sin .25pi)" and "(sqrt e)^(sqrt 2)". The standard configuration of the parser has a wide variety of mathematical operations, ranging from basic arithmetic, trigonometry, combinatorics, linear algebra and more. CalM includes a script interpreter which is based on the math parser. The CalM scripting language... -
14
Args
A java configuration file and command line parser
Powerful rule-based command line parser and cofiguration reader. Options can be created using annotations or manually using a powerful API. Options are grouped into hierarchical namespace, allowing sophisticated inclusion, exclusion and grouping based on rules. Supports multiple dialects and automatic document creator such as typical usage and UNIX manpages. POSSIX, GNU, MSDOS command line parser dialects. XML, INI, PROPERTIES configuration file types. Database and general persistance or... -
15
Logic Expressions Java Antlr Compiler
Java Antlr Compiler for Logic Expressions
This tools converts a given logic expression in it's Conjunctive normal form -
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CyNetSVM is a tool developed in JAVA and integrated as a Cytoscape APP to predict clinical outcome and identify network bio-markers by integrating gene expression data and PPI data. The app can be installed directly from Cytoscape app store. We also provided the package at http://sourceforge.net/projects/netsvmjava/files/netSVM.zip/download The example data to test the package is available at http://sourceforge.net/projects/netsvmjava/files/Example.zip/download The user manual is available at http://sourceforge.net/projects/netsvmjava/files/UserManual_CyNetSVM.pdf/download
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Discriminative Language Editor
Discriminative language editor based on ontologies
Text editor in Java that is able to detect discriminative expressions while the user is typing. When the internal ontology-based analyzer detects a potential discriminative expression the user is advised by underscoring the related words in the text. A descriptive message about the issue is also shown to the user when the cursor is placed over the potential discriminative expression. -
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- A port mirror to forward socket connections. - A java compiler for eclipse projects - A regular expression tester window in java (regexp.jar) - Some other non useful classes
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PANTHER project: software for modeling of protein sequence and function evolution, and tools for applying these data to the analysis of genome data, expression data and coding SNPs. Details available at http://www.pantherdb.org.
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Notepad3
Light-weight Scintilla-based text editor with syntax highlighting
Notepad3 is a fast and light-weight Scintilla-based text editor with syntax highlighting. Notepad3 is an excellent replacement for the default Windows text editor. Notepad3 offers many extra features over Notepad. It has a small memory footprint, but is powerful enough to handle most programming jobs. -
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Logi (Local Observations to Global Integration) transforms several local coordinate systems (composed of polar measurements) into a global spatial uniform network with respect to the Guide to the Expression of Uncertainty in Measurement (GUM).
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jasperreports-scala
Adds Scala as an expression language for the JasperReports library
The Scala programming language is a hybrid functional/object-oriented programming language that runs natively in the Java VM. It is similar in some respects to Groovy, but it is a statically typed language. Visit www.scala-lang.org for more info. This project adds the JRScalaCompiler and JRScalaGenerator classes, modifies the JRReport class to add Scala as a supported language, and provides a demo project with a sample report that uses Scala expressions. -
23
Rootvole
a text parsing library that matches text with concepts.
For general processing of voice queries we developed a text parsing library named 'Rootvole' that can be used to match text with semantic concepts. The algorithm was implemented in Java and can be described as a form of a parsing expression grammar, where we generate the expressions to be detected beforehand by regular expressions and store them in a vocabulary. The central class is the parser class, which is instantiated as a series of vocabularies, simple text lists that describe tokens and synonyms, and value descriptors. ... -
24
TISP
A simple, LISP-like programming language.
ThyLordRoot's Interpreted S-expression Parser (TISP) is a LISP-like programming language developed for the benefit of ThyLordRoot's viewers on Twitch.tv. This heritage was chosen for its simplicity and affordance of rapid prototyping. Although it is a toy language, it is intended to be Turing complete, and bootstrapping TISP is a major goal. -
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The Junicon Project
Java-based Dialect of the Unicon Programming Language
Junicon is a Java-based implementation of Unicon, a very high level object-oriented goal-directed programming language that lives at Unicon.org. Junicon features seamless Java object access, interactive interpretation, and numerous cleanups and enhancements while retaining Unicon's core expression-evaluation semantics. Please see the Junicon Project Web Site for publications about Junicon.
