Search Results for "hpc code analysis" - Page 29
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Showing 1121 open source projects for "hpc code analysis"
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MPI 3D Heat equation
MPI Numerical Solving of the 3D Heat equation
This scientific code solves the 3D Heat equation with MPI (Message Passing Interface) implementation. There are Fortran 90 and C versions. A benchmark analysis is also preformed with the relation between speedup and number of processes. -
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BioNet-Finder
Network-based modeling and analysis for complex biological data
...This is carried out applying network analysis methods from different fields, such as Structural Equation Modeling (SEM), together with data reduction algorithms (e.g., random walkers, spectral analysis, shortest path-based or topology-based algorithms). The BioNet-Finder project is at its initial steps, and it will continuously update with new methods and code. -
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pyhanlp
Chinese participle
pyhanlp is a Python interface for HanLP (Han Language Processing) that lets you use a mature Java-based NLP toolkit from Python workflows without rebuilding the underlying algorithms. It is commonly used for Chinese-language NLP tasks where you want production-grade tokenization and linguistic analysis, but still want the convenience of Python scripting. The project focuses on making HanLP’s capabilities accessible through a Python-friendly API surface, so you can integrate NLP steps into data pipelines, notebooks, and downstream ML or information-extraction code. In practice, it serves as a bridge layer: Python calls are translated into the corresponding HanLP operations, so you can keep your application logic in Python while relying on HanLP’s implementations. ... -
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CSBB-v2.1 [CSBB-v3.0 is now available]
Computational Suite For Bioinformaticians and Biologists
...CSBB is implemented in Perl, while it also leverages the use of R, java and ruby in background for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the need to write programming code. CSBB is currently available on Linux, UNIX and Windows platforms. Currently CSBB provides 17 modules focused on analytical tasks like normalization, visualization, statistics, RNA-SEQ etc. -
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postcss-cssnext
PostCSS plugin that helps you to use the latest CSS syntax
PostCSS-cssnext is a PostCSS plugin that helps you to use the latest CSS syntax today. It transforms CSS specs into more compatible CSS so you don’t need to wait for browser support. -
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CSBB-v3.0
CSBB - Computational Suite for Bioinformaticians and Biologists
...CSBB is implemented in Perl, while it also leverages the use of R, java, python and ruby in background for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the need to write programming code. CSBB is currently available on Linux, UNIX. Currently CSBB provides 18 modules focused on analytical tasks like performing upper-quantile normalization, interactive visualization and next generation sequencing pipelines. CSBB now also has capability to process public data. ... -
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CoFIM: Com-based Framework for Influ Max
CoFIM: A community-based framework for influence maximization on large
This is the source code of our submitted paper titled "CoFIM: A community-based framework for influence maximization on large-scale networks". Please do not use the code for commercial purpose. -
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This project contains a set of python scripts to manipulate, read, join and plot information obtained from the PROCAR file as obtained from the VASP code. The scripts are able to do fat band analysis, plot bands by atom, spin, etc. It is able to manage non polarized, polarized and non collinear calculations. A set of simple examples are given to guide the user.
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The JAGS ALCOVE module is an extension for JAGS, which provides functions to enable a bayesian analysis with the ALCOVE model. See the README in Code for usage details.
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LBTR - Learning Based Targeted Revision
LBTR: learning based method for incremental community detection
This is the source code of paper: Shang, Jiaxing, Lianchen Liu, Xin Li, Feng Xie, and Cheng Wu. "Targeted revision: A learning-based approach for incremental community detection in dynamic networks." Physica A: Statistical Mechanics and its Applications 443 (2016): 70-85. Anyone using the source code plearse cite this paper. -
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Intel neon
Intel® Nervana™ reference deep learning framework
neon is Intel's reference deep learning framework committed to best performance on all hardware. Designed for ease of use and extensibility. See the new features in our latest release. We want to highlight that neon v2.0.0+ has been optimized for much better performance on CPUs by enabling Intel Math Kernel Library (MKL). The DNN (Deep Neural Networks) component of MKL that is used by neon is provided free of charge and downloaded automatically as part of the neon installation. The gpu... -
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Psygraph
Code for the Psygraph mobile application
Psygraph is a Personal Data Collector (PDC) and activity timer. It includes a stopwatch, timer, counter, and note taker (voice recorder), each of which collects data from the device’s sensors (e.g. the device velocity and location (via GPS)). Although the interface is simple (a button or two on each screen), the data is saved for later analysis and display (you can store and view the data on WordPress). It is a scientific instrument that is easy to use. It makes an excellent general-purpose... -
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Kaleidoscope
Haskell LLVM JIT Compiler Tutorial
This repository is a Haskell port of the classic LLVM “Kaleidoscope” tutorial that walks you through building a tiny programming language from scratch. It covers the complete pipeline: tokenizing and parsing a simple, expression-oriented language, constructing an AST, and generating LLVM IR with a JIT so you can execute code interactively. Along the way it adds language features like user-defined functions, conditionals, loops, and operator precedence, demonstrating how each addition impacts... -
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CbProcessingVisual
Visual using the java processing API
I was asked to upload this project and give a short description here: It's based on java processing api. Then i used some fft analyzer which should be obvious looking at the code. There is a option to generate the fft file. this must be done first. Then the fft file can be used to render a movie. Not sure how the options worked to make arealtime fft analysis and show the video in realtime (it does not peprfform goog because some expensive framebuffer operations there) Ah ja, the demo video includes some effects that are not included in the source. ... -
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Eclipse Checkstyle Plug-in
Integrates Checkstye into the Eclipse IDE
The Eclipse Checkstyle plug-in integrates the Checkstyle Java code auditor into the Eclipse IDE. The plug-in provides real-time feedback to the user about violations of rules that check for coding style and possible error prone code constructs. -
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Quality Performer
Eclipse Plugin to improve Code Quality.
Quality Performer is a Eclipse Plugin, used to improve Code Quality. It analyzes Java source code for Redundant Modifier and resolves the same. Update Site URL: https://dl.bintray.com/sudhasoft/eclipse-quality-performer-plugin/releases/ -
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Construct2D
COmputational fluid dyNamics STRUctured grid CreaTor for 2D airfoils
...The grids are generated in Plot3D format. The only required input file is the set of coordinates defining the airfoil geometry, using the same format as XFoil, the popular vortex-panel code for airfoil analysis. Construct2D can create grids with O topology (recommended for airfoils with a blunt trailing edge) or C topology (recommended for airfoils with a sharp trailing edge). Now available in version 2.0: hyperbolic grid generation to create higher quality grids in a fraction of the time compared to elliptic grid generation. ... -
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DataScienceR
a curated list of R tutorials for Data Science, NLP
The DataScienceR repository is a curated collection of tutorials, sample code, and project templates for learning data science using the R programming language. It includes an assortment of exercises, sample datasets, and instructional code that cover the core steps of a data science project: data ingestion, cleaning, exploratory analysis, modeling, evaluation, and visualization. Many of the modules demonstrate best practices in R, such as using the tidyverse, R Markdown, modular scripting, and reproducible workflows. ... -
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This site hosts the source code for C++ version of the Broker for SBW, NOM module, advanced simulation suite, analysis applications and model editors.
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Open-source Python software library and GUI desktop environment for direct bioinformatic analysis of mass-spectrometry data through powerful scripting tools and interfaces to many machine data formats, database search engines, and peptide data formats. For a copy of the source code, check out our Github repositories: mzDesktop: https://github.com/MaxAlex/mzDesktop multiplierz: https://github.com/MaxAlex/multiplierz
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Edge.js
Run .NET and Node.js code in-process on Windows, MacOS, and Linux
An edge connects two nodes. This edge connects Node.js and .NET. V8 and CLR/.NET Core/Mono - in process. On Windows, MacOS, and Linux. You can script C# from a Node.js process. Edge.js allows you to run Node.js and .NET code in one process on Windows, MacOS, and Linux. You can call .NET functions from Node.js and Node.js functions from .NET. Edge.js takes care of marshalling data between CLR and V8. Edge.js also reconciles threading models of single threaded V8 and multi-threaded CLR.... -
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GlycoPAT
Comprehensive, open-source tool for glycoproteomics MS data analysis
GlycoPAT is a modular, open-source MATLAB based toolbox for shotgun mass spectrometry based glycoproteomics data analysis. This program provides a novel platform for the streamlined analysis of traditional LC-MSn based high-throughput experimental data for the identification of site-specific N- and O-linked glycosylation on various proteins. More details are available at https://www.VirtualGlycome.org/glycopat Source code also available at https://github.com/kaichengub/GlycoPAT If you use this software please cite: Gang Liu, Kai Cheng, Chi Y. ... -
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BinNavi
BinNavi is a binary analysis IDE that allows to inspect, navigate, etc
BinNavi is a binary analysis IDE - an environment that allows users to inspect, navigate, edit, and annotate control-flow-graphs of disassembled code, do the same for the callgraph of the executable, collect and combine execution traces, and generally keep track of analysis results among a group of analysts. BinNavi uses a commercial third-party graph visualisation library (yFiles) for displaying and laying out graphs. -
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jnum
Java numerical classes for astronomy and more...
Imagine Numerical Recipes in the 21st century. Fast object-oriented Java code for numerical analysis, with a special focus on astronomical application (coordinate conversions, WCS projections etc.) -
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This is the home of the P06PymfGUI, a GUI for the analysis of XRF imaging data with the Python Matrix Factorisation Module (code.google.com/p/pymf/). There are Source Code, Windows Executable (64-bit) and a manual in pdf form.
