Search Results for "data structure" - Page 27
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Showing 890 open source projects for "data structure"
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ReArch Database Project
Code Repository for the Recursive Relational Archaeological DBMS
The Recursive Relational Archaeological Database (ReArch) is a data management platform that preserves the practical configuration that data tables provide, while relaxing the strict, attribute-based model that so characterized modern databases. The schema consists of an inherently recursive and extensible structure that can incorporate heterogeneous observations and analyses into a common framework in order to evaluate their commensurability. -
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ViralNet is an open-source software package for inferring the Clonal Structure of Viral Populations from Time Series Sequencing. The program aims to characterize and quantify the composition, the abundance and the evolutionary history of the underlying viral population within a given host by analyzing Next Generation Sequencing data. ViralNet takes as input the collection of reads (or several collections of reads in case of many data samples or daily data) and the reference genome and it constructs the evolutionary network exhibiting the species abundance profile and the list of haplotypes along with their prevalence.
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adLIMS
adLIMS: a Laboratory Information Management System with ADempiere
...Our laboratory exploits PCR techniques and next-generation sequencing (NGS) methods, to perform high-throughput integration site monitoring in different clinical trials and scientific projects, based on the delivery of therapeutic genes by viral vectors integrating into the genome of target cells. We process around 1500 samples/year resulting in hundreds of millions of sequencing reads, requiring automation and posing new challenges in data storage, monitoring of sample process and computational tools for analyses. Thus we need to standardize data management and tracking systems, built on a scalable, flexible structure with an easily accessible and web based interface, what is usually called Laboratory Information Management System (LIMS). -
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...Basically each scenario consists of a database Production (BDP) large volume that simulates a real environment and a database of Experiments (BDE) that contains information about SQL, Mutants and results of experiments with random instruction methods. The reference value is nothing more than a set of data bases. The first scenario has the structure and the generated data for the specific benchmark, the second is its structure and data obtained from an actual application.
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MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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xmlbuilder-js
An XML builder for node.js
XMLBuilder‑JS provides a fluent API for building XML in Node.js. You can create elemental structures via method chaining or object literals, include comments, attributes, and streams. It’s the baseline implementation, with xmlbuilder2 available now for modern DOM compliance, namespace handling, and format conversion. -
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Importer library to import assets from different common 3D file formats such as Collada, Blend, Obj, X, 3DS, LWO, MD5, MD2, MD3, MDL, MS3D and a lot of other formats. The data is stored in an own in-memory data-format, which can be easily processed. www.open3mod.com/ is a 3D model viewer and exporter based on Assimp that is also Open Source.
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XML Content Provider
Plugin to connect XML data sources to the GIN Server
The GIN Server is a semantic middleware for efficient "bottom-up" data integration and automized semantic analysis for dynamically linked data. The XML Content Provider is a configurable plugin for the GIN Server to integrate any XML data source with a simple structure. -
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EJS
Embedded JavaScript templates for node
...While it doesn’t impose a rigid structure (you’re free to organize templates however you like), it works reliably and is simple to adopt. -
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Coconut Framework
Base infrastructure for Mac OS X application
Coconut framework is base infrastructure for Mac OS X application. For more details, see the project web page (http://coconut-frmwk.sourceforge.net). -
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EmulMultiFit
Simultaneously fit SAS data with polydisperse core-shell-shell spheres
...hard sphere structure factor can be used, too -long computation times (depending on problem size and amount of constraints) from hours to a few days are possible -non-parallelized code -
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Orbus MVC
A fast and easy PHP MVC framework
This project aims to create a simple and useful MVC structure for rapid development of aplications in PHP. The second goal is to provide a solid layout to improve the user interface too. For while, only in Portuguese (BR). Please send questions to magno.mabreu@gmail.com -
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DDMsuite
Derivative Difference Minimization Program
DDM program is designed for crystal structure analysis from powder diffraction data by making use of either Rietveld or Derivative Difference Minimization (DDM) method. In the DDM method the refinement is aimed not at minimizing the absolute difference between the experimental and calculated profiles but at minimizing the oscillations (or curvature) of the difference curve. -
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StabLe
An algorithm for learning stable graphical models from data
Stable Graphical Model Learning (StabLe) is an algorithm for learning the structure and parameters of stable graphical (SG) models from data. Stable random variables are motivated by the central limit theorem for densities with (potentially) unbounded variance and can be thought of as natural generalizations of the Gaussian distribution to skewed and heavy-tailed phenomenon. SG models are multi-variate stable distributions that represent Bayesian networks whose edges encode linear dependencies amongst random variables. ... -
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AWclust is easy to use non-parametric population structure analysis software written for R with a GUI interface. Just point and click and you will be on your way to discovering the important cluster information in your SNP data sets.
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Calculates Natural Product(NP)-likeness of a molecule, i.e. the similarity of the molecule to the structure space covered by known natural products. NP-likeness is a useful criterion to screen compound libraries and to design new lead compounds. Maven dependancy: <dependency> <groupId>uk.ac.ebi.cheminformatics</groupId> <artifactId>NP-Likeness</artifactId> <version>2.1</version> </dependency> Required repository: <repositories> ...
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ProximityForest
Efficient Approximate Nearest Neighbors for General Metric Spaces
A proximity forest is a data structure that allows for efficient computation of approximate nearest neighbors of arbitrary data elements in a metric space. See: O'Hara and Draper, "Are You Using the Right Approximate Nearest Neighbor Algorithm?", WACV 2013 (best student paper award). One application of a ProximityForest is given in the following CVPR publication: Stephen O'Hara and Bruce A. -
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Multi-Column Row Comparator
Provides multi-column sort capabilities for row-based text file data
...The compare method assumes String arguments which are tokenized. These tokens represent the individual columns that are to be sorted based on rules that are injected prior to execution. The data structure of the file is also defined prior to execution. This implementation sorts the following column data types: - java.lang.String - java.Math.BigInteger - java.Math.BigDecimal - org.joda.time.DateTime Columns are sorted based on specified attributes, some of which are type specific. For example: - Treat Null as Low Sort Order (boolean) - Ascending Order (boolean) - DateTime Pattern (String) - BigDecimal Scale (integer) ... and others -
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q pipeline manager
q: integrated platform for pipeline configuration and management
The q utility is a platform for creating and managing data analysis pipelines. It expands the value of your existing job scheduler - either Grid Engine or TORQUE PBS - through numerous functions that help you organize, submit, monitor, manage and share your informatics work. Data processing pipelines require high-level organization and parallelization of work to optimize resource utilization and decrease the time to results. q (from queue) allows complex job sequences to be efficiently... -
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SPE Toolbox
MatLab functions for reading WinView/WinSpec .spe files
This toolbox is a collection of MatLab functions for reading WinView/WinSpec files (.spe extension) directly to MatLab. It provides functions for reading full header from file into a structure, reading frames into matrices, and reading pixel values across all frames. You can use these functions to analyse and process experiment data stored in .spe files in MatLab, and to write functions to export .spe files to animated GIFs for use in presentations. Also includes simple MatLab application for converting files to GIF, AVI and .spe files, and provides functionality for quick addition of support for WinView-like formats by users, without the need to call developers. -
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SAWU104 textile / knot diagram editor
Generic textile / knot diagram / thread topology editor
A linked data structure for modelling generic weaving patterns, more like a topological representation than a grid type one, for the non-weavers. This editor is capable to represent all the weaveable patterns and more. In other terms, it is up to you to check if the patterns drawn can be physically created, without endless loops of threads etc. -
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SecStAnT
Secondary Structure Analysis Tool for data selection and statistics
SecStAnT is a tool for the automatic creation of data-sets of structures from Protein Data Bank (PDB) with user-defined structural composition, and for the calculation of their internal variables distributions. SecStAnT is able to 1. Select from PDB data sets of structures based on user specified secondary structures (defined based on internal PDB classification or on DSSP) and/or sequence motives. 2. Build Data-sets at different levels of resolution (all atoms, only backbone, only... -
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nacho
Python micro web-framework and asynchronous networking library
...Because it encourages consistency among services, teams can spin up new microservices with a shared structure and skip repetitive setup. Though the repository may be less active than some major frameworks, it serves as a valuable jump-start for projects where speed and uniformity matter. -
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Nuclei
Feature rich GUI for nuclear decay schemes
Nuclei is a software tool for the displaying of nuclear decay schemes and estimated energy spectra, the calculation of angular γ emission anisotropies, and the automated search for appropriate decay cascade properties. It uses the Evaluated Nuclear Structure Data Files (ENSDF). A description of Nuclei's functionality and results obtained using its search method was published in Nuclear Instruments and Methods in Physics Research, Section A: M. Nagl, et al., NIM A 726 (2013), 17-30 [doi:10.1016/j.nima.2013.05.045] ------------------------- © 2012-2013, Matthias Nagl, II. ... -
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Unsupervised TXT classifier
Classify any two TXT documents, no training required - JAVA
...This extracts a relevant structure for both documents (and thus avoids the over-training) which are then compared using the Vector-Space analysis to give a range of belonging of one document to another (and thus avoids the shortage of information). This method can be used to create the user-defined classes by merging texts of certain categories and then to calculate the relevant distances between the documents, but this is not necessary. -
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virHap
A Software package for Inferring the haplotype structure of a mixed vi
PhyVar is an open-source software package for viral quasi-species reconstruction, which makes use of a novel phyloprobabilistic approach to infer the sub clonal composition and evolutionary history of a viral population from NGS data. The program aims to characterize and quantify the composition, the abundance and the evolutionary path of the underlying viral population within a given host by analyzing Next Generation Sequencing data. The program takes as input the collection of reads...
