Search Results for "network graph analysis" - Page 16
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Showing 902 open source projects for "network graph analysis"
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RootGraph
A graphic optimization tool for automad image analysis of plant roots
...Please cite: Cai, Jinhai and Zeng, Zhanghui and Connor, Jason N. and Huang, Chun Yuan and Melino, Vanessa and Kumar, Pankaj and Miklavcic, Stanley J. (2015), "RootGraph: a graphic optimization tool for automated image analysis of plant roots" Journal of Experimental Botany, 66(21), pp.6551-6562. -
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Awesome Recurrent Neural Networks
A curated list of resources dedicated to RNN
A curated list of resources dedicated to recurrent neural networks (closely related to deep learning). Provides a wide range of works and resources such as a Recurrent Neural Network Tutorial, a Sequence-to-Sequence Model Tutorial, Tutorials by nlintz, Notebook examples by aymericdamien, Scikit Flow (skflow) - Simplified Scikit-learn like Interface for TensorFlow, Keras (Tensorflow / Theano)-based modular deep learning library similar to Torch, char-rnn-tensorflow by sherjilozair, char-rnn... -
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pmGraph is an application for graphical network monitoring. It draws graphs of network traffic (recorded by pmacct) broken down by local and remote host and port. It is part of Aptivate's Bandwidth Management Tools suite.
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Cacti-SNMPAgent
A SNMP agent for Cacti
SNMPAgent is a Cacti system plugin offering a memory persistent SNMP agent based on NET-SNMP. It includes the official Cacti MIB. This plugin allows other Cacti plugins to register custom MIB files as well as generating SNMP notifications. Additionally Cacti can Monitor itself or being monitored by a foreign NMS using SNMP. Graph and data templates are part of the download package. At least the SNMPAgent can also be used as high performant bridge to cache non SNMP data polled by custom... -
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LowMACA
Low frequency Mutation Analysis via Consensus Alignment
The remarkable efforts recently carried out to fully understand the mutational landscape of various kinds of cancer have revealed that the mutational processes can be extremely variable depending on the tumor type and the clinical features of patients. Thanks to these efforts, we have reached a clear picture of the most commonly mutated genes in various types of cancer. However, we are still far from a complete picture of rarely mutated genes, which can be an important target for... -
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CoGA
R package for differential co-expression analysis
...In addition to the differential co-expression analyses, the tool provides graphical interfaces for network visualization, ranking of genes according to their "importance" in the network, and the standard single gene differential expression analysis. -
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The NEDSS Base System (NBS) is a web-based integrated public health disease surveillance system sponsored by the Center for Disease Control and Prevention(CDC). It was developed to provide a NEDSS-standards based system for the secure, accurate, and efficient collection, transmission, and analysis of public health data. It also provides a platform upon which program-specific modules can be built to meet state and program area requirements. State health departments use the NBS for the...
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Golden Cheetah
Cycling Performance Software for Linux, Mac OS X, and Windows
...Imports ride data downloaded with other programs, including TrainingPeaks WKO+ and the manufacturers' software for the Ergomo, Garmin, Polar, PowerTap, and SRM devices. Provides a rich set of analysis tools, including a critical power graph, BikeScore calculation, histogram analysis, a best interval finder, and a pedal force versus pedal velocity chart, to name just a few. Is available for Linux, Mac OS X, and Windows. Is released under an Open Source license. We believe that cyclists should be able to download their power data to the computer of their choice, analyze it in whatever way they see fit, and share their methods of analysis with others. ... -
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PhPress
A LAMP Open-Source solution for Morphological Analysis of Newspapers
A tool to help archivists and historians to scan, stock, display and analyse collections of newspapers. -
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nagiosgraph parses output and performance data from Nagios plugins, stores the data in RRD files, and creates graphs and reports from the data. Graphs and reports can be embedded in Nagios. Easy to setup, highly customizable, and few dependencies.
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optPBN
An optimization toolbox for probabilistic Boolean networks
We introduce optPBN, a Matlab-based toolbox for the optimization of probabilistic Boolean networks (PBN) which operates under the framework of the BN/PBN toolbox from Shmulevich et al. optPBN offers an easy generation of probabilistic Boolean networks from Boolean rule-based modeling and allows for flexible measurement data integration from multiple experiments and a subsequent integrated optimization problem generation which then can be solved with different optimizers. Thereby optPBN... -
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Savsoft Quiz v2.0
Savsoft Quiz is an Open Source Quiz Management Web Application
Savsoft Quiz v2.0 is a php based open source web application to create and manage online quiz, test, exam on your website. To read terms and condition please visit: http://savsoftquiz.com/ -
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Universal Java Matrix Package
sparse and dense matrix, linear algebra, visualization, big data
The Universal Java Matrix Package (UJMP) is an open source Java library which provides sparse and dense matrix classes, as well as a large number of calculations for linear algebra such as matrix multiplication or matrix inverse. Operations such as mean, correlation, standard deviation, replacement of missing values or the calculation of mutual information are supported, too. The Universal Java Matrix Package provides various visualization methods, import and export filters for a large... -
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circlize
Circular visualization in R
...It implements many types of plots using circular layouts: chord diagrams, circular heatmaps, arcs/links between sectors, genomic data visualization, etc. It provides low-level drawing functions as well as high-level functions to build complex visualizations. It’s often used in genomics, network analysis, or other fields where relationships among categories or entities can be nicely displayed in a circular fashion. Support for circular heatmaps, multiple tracks (rings), for showing multiple layers of data per sector. Good performance and stable codebase, detailed documentation including a book on usage examples. -
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Korat2015
Enhanced Korat supports GUI, FSM, JUNG and JSON.
...Please see http://korat.sourceforge.net/index.html for more information on the Korat application. Korat 2015 includes the below enhancements to Korat: - Graphical User Interface using Java Swing - Graph Output Format using JUNG (Java Universal Network/Graph Framework) - Finite State Machine Domain - Graph Archival using JSON (JavaScript Object Notation) The Wiki page has information to download, install and run Korat 2015. -
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LogMiner is a powerful log analysis package for Apache/IIS (or other web servers using the "combined" or Extended W3C log formats). It can extract and present statistics about visits, hits, traffic, navigation paths, browsers and OS's used by users.
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Automalator
State Dependency deconstructor and mapper for C source code.
Flowcharts not telling you what you want to know about some C source code? Try a State Dependency map! Every C source file is an implemention of a state machine. Implicit in the definition of a state machine is a network of dependencies between the states. The Automalator * deconstructs the C code into the core state machine * collates the transactions into the dependency net * generates a diagram-format file with the states and dependencies as the nodes and edges. ... -
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PRIMUS
Pedigree Reconstruction and Identification of a Maximum Unrelated Set
...For example, when there are two equally sized maximum sets of unrelated individuals in a network, PRIMUS can preferentially select the set with more affected individuals. Subscribe to the PRIMUS-Users e-mail list for notifications of updates and new versions. Relevant software: http://students.washington.edu/jeanm5/Simulate_IBD_Python.ta -
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Tellervo
Dendrochronological sample measurement, curation and analysis program
Tellervo enables users to measure, curate and analyse dendrochronological samples. It has a server/client architecture enabling users to collaborate within and between laboratories. -
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NetView P
Population Genomics Network Analysis Pipeline
NetView P has been re-structured as a package for R and moved to GitHub: https://github.com/esteinig/netview -
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VoIP Honey project provides a set of tools for building an entire honeynet, thus includes honeywall and honeypot emulating VoIP environments such as Asterisk PBX or OpenSer with fully configurable connections. Voip Honey runs on GNU/Linux and Windows Systems. It can be compiled for Mac OSX as well.
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Open Information Integration Tool Suite (Open II) is used by analysts and programmers to accelerate data integration and harmonization across organizations. OpenII has a neutral schema repository for browsing and comparing all sorts of data models. OpenII is built as a Rich Client Platform Application on top of Eclipse 3.x. Developers need to download Eclipse, install the RCP support, the Fatjar plugin and the Delta Pack in one of the 3.x flavors. Release Notes Release Date: Jan...
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MSP: a 3D flocking boids simulator
A highly flexible 3D flocking boids simulator, conceived as a tool for
...The simulator delivers a 3D visual interface and provides as an output file all the instantaneous microscopic information related to each boid (positions and velocities over time), allowing in this way subsequent analysis, such as searching for synthetic and higher-level descriptions of collective behaviors, relying for instance on global network and meta-structural properties. -
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Workbench for visualizing biological networks (regulatory, interaction, and metabolic). Can be used as a front-end for BNDB datawarehouses, but also as stand-alone tool.
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cSploit
cSploit - An Android network penetration suite.
cSploit is an Android network analysis and penetration suite which aims to offer to IT security experts/geeks the most complete and advanced professional toolkit to perform network security assesments on a mobile device.Once cSploit is started, you will be able to easily map your network, fingerprint alive hosts operating systems and running services, search for known vulnerabilities, crack logon procedures of many tcp protocols, perform man in the middle attacks such as password sniffing ( with common protocols dissection ), real time traffic manipulation, etc, etc .
