Search Results for "output" - Page 95
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Showing 4136 open source projects for "output"
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Flexible Brain Graph Visualizer
Matlab code to visualise brain graphs from connectivity matrices
...To aid orientation, a cortical mesh can be added, as can convex hull outlines. The colouring and sizing scheme is fully configurable for both edges and vertices. You can see some example output in <http://www.ncbi.nlm.nih.gov/pubmed/22677149> <http://www.ncbi.nlm.nih.gov/pubmed/20541019> <http://www.ncbi.nlm.nih.gov/pubmed/24562717> -
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SQL CLR Function for Address Geocoding
SQL CLR Function for Address Geocoding
This SQL Server user-defined CLR function takes a postal address on input and returns a properly parsed and corrected address on the output plus the latitude and longitude coordinates of its location on the map. -
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A java-based parser for parsing/grabbing web sites and other text or XML documents, based on a nondeterministic parser language, creating XML output. Also contains a few utility classes for HTML, CSV and text parsing, and additional character sets.
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LGML
LGPL GML parser
LGML is a GML parser under the LGPL license. The aim is to parse a GML document or fragment in order to get a WKT output. 2D and 3D inputs are both handled, but it is not permitted to have mixed geometries. The caller can choose if the input coordinates are parsed as X, Y, Z (if present) order, or Y, X, Z (if present) order. The willing of the project is to be a starting point useful for developers that need to parse GML objects in order to use them, for example, in the context of OGC catalogue projects. ... -
Gemini 3 and 200+ AI Models on One PlatformBuild, govern, and optimize agents and models with Gemini Enterprise Agent Platform.
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nail_systems_biology
NAIL is a toolset for network analysis in the life sciences
...Modelling biological systems as networks (graphs) is becoming a common approach in the life sciences. However, different algorithms typically use different input and output data types, are implemented using different technologies, and are demonstrated by application to different biological problems. Because of this, the primary goal of the NAIL project is to provide a straightforward way to use network approaches in the life sciences, and to apply a variety of techniques quickly and easily on the same data. -
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class.debug.php provide simple functions to set control infos in your code, with many options to output this info in your browser and/or write in a logfile - output of infos in browser, logfile or browser and logfile - (browser) output infos based on a error level - (browser) output infos compact or every message in a new line - (browser) output info based on a special pattern - (browser) output infos marked with special colors (html) - (logfile) log infos based on a error level - (logfile) log infos in a new file each execution, hour, day, week, month or year - (logfile) output infos compact or every message in a new line - (logfile) output info based on a special pattern TODO: - (logfile) create new logfiles based on a deadline - (logfile) create new logfiles based of a filesize - (logfile) create new logfiles based of a date - (logfile) create new logfiles based of a memorylimit look at debug_config to see all options
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miRNA Temporal Analyzer (mirnaTA)
Differential expression analysis tool for miRNAs in temporal studies
The microRNA Temporal Analyzer (mirnaTA) is a bioinformatics tool which can be used to identify differentially expressed miRNAs in temporal studies. It is implemented in Perl and R package (>= 2.13.0) and can be run across multiple platforms such as Linux, Mac and Windows. The mirnaTA requires that users provide data from a minimum of two time points and analyze up to 20 time points. To normalize data and remove technical variability, Normal Quantile Transformation (NQT) was used, and the... -
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NGSimple
NGS - Next-Generation Sequencing sIMulation PipeLinE
...It's recommended to start with a short reference (~5M bases), in case that the number of generated reads is too large for assembly. input: reference + parameter output: ./1.fastq/reads.fastq assemly.pl assemble the reads (./1.fastq/reads.fastq) from those designed libraries to assemblies. based on the parameters specified in CONFIG file. It will generate assmblies with different K-mer (./2.assembly/*), and choose the assembly with largest n50. Finally, it will produce a quartile summary and mummerplot for each for you to select a good parameter combination. ... -
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SYNX
A command-line tool that reorganizes your Xcode project folder
A command-line tool that reorganizes your Xcode project folder to match your Xcode groups. Make sure that your project is backed up through source control before doing anything. Execute the command on your project to have it reorganize the files on the file system: -
Custom VMs From 1 to 96 vCPUs With 99.95% UptimeLive migration and automatic failover keep workloads online through maintenance. One free e2-micro VM every month.
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Fountain Libre Office Tools
Fountain Tools for LibreOffice easily format professional screenplays.
Fountain Tools for LibreOffice is a freeware toolset to easily create professionally formatted screenplays "from scratch," sourced from platform-independent and future-proof fountain text files (or, a subset of fountain), including proper handling of elements that span pages (no widows or orphans--it's a layout thing), and formatting which so closely mimics the better "bang for your buck" layout of Movie Magic Screenwriter that no reader will be the wiser. In other words, it may shorten your... -
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EpsGraphics is a Java library to output EPS graphics. EpsGraphics is an extension of Graphics2D that allows you to draw to an EPS file as it was a Java graphics object. CMYK as well as RGB color models are supported.
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IPred
Integrate ab initio and evidence based gene predictions
IPred (Integrate gene Predictions) is a program that combines the output of ab initio and evidence based (including comparative based) gene finders to improve on the overall prediction accuracy. IPred is written in Python and can be used from the command line as well as with the help of a GUI (java 7 based). It is available for linux, windows and mac. To install IPred, simply download the package and unpack it with >unzip IPred.zip. -
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psimpl - generic n-dimensional polyline simplification. psimpl is a lightweight C++ library that is generic, easy to use, and supports multiple simplification algorithms, including Douglas-Peucker.
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DRAMMS
A Deformable Medical Image Registration Toolbox
DRAMMS is a software package designed for 2D-to-2D and 3D-to-3D deformable medical image registration tasks. Released by Section of Biomedical Image Analysis (SBIA) at the University of Pennsylvania. Some typical applications of DRAMMS include, -- Cross-subject registration of the same organ (can be brain, breast, cardiac, etc); -- Mono- and Multi-modality registration (MRI, CT, histology); -- Longitudinal registration (pediatric brain growth, cancer development, mouse... -
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phpBathymetry
Using PHP-CLI to parse NMEA data to generate depth maps with GD
Using PHP-CLI to parse NMEA data to generate depth maps with GD. As fishing is a passion of mine,and it got me to consider using the NMEA formatted data output from my Lowrance 5-DSI Elite to generate a bathymetric map of the lake at my cottage. It is currently very crude, just a bunch of CLI scripts that record NMEA data, and the other parses the stored data and builds a depth, water temperature and sample frequency map. -
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reconfig
This program can manage input/output database of text files data
This package can get configuration from files, pages and databases. The main class can get input data from files, remote site pages, a database or the result of execution of given PHP code. The class can extract values from the input data using regular expressions or custom PHP code and saves it to files or a database. Currently it supports MySQL, PostgreSQL and Microsoft SQL server databases. -
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Linux Exploit Suggester
Linux Exploit Suggester; based on operating system release number
...It runs uname -r by default (or accepts a manual -k kernel string) and prints a suggestive, human-readable list of possible exploit names, CVEs, and references that match that kernel version. The tool intentionally keeps its logic simple: it performs string matching and warns that patched or back-ported kernels can mislead results, so its output should be treated as pointers for further verification rather than definitive proof of exploitable code. Sample output demonstrates common exploit names, CVEs, and direct exploit-db / vendor links to aid triage. -
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wavinterleave
wavinterleave: audio file matrix switcher for WAV and AIFF
wavinterleave: audio file matrix switcher which interleaves multiple input WAV or AIFF files to one output WAV or AIFF file --- wavinterleave: Copyright (c) 2010-2013 by Klaus Michael Indlekofer. All rights reserved. --- wavinterleave-GUI: Copyright (c) 2010-2014 by Klaus Michael Indlekofer and Felix Kramer. All rights reserved. Note: Special restrictions apply. See disclaimers below and within the distribution. (We are not affiliated in any way with companies/persons mentioned above. ... -
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FicMake
Document layout program with multiple output formats
FicMake is a document layout program, which works in combination with groff, gnu make and a few other programs (most of which come with your favourite Linux Distribution) to allow you to concentrate on the writing itself. -
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It's a program that plots Bode diagrams with an excellent precision. In this new version it's very easy to provide the function to plot thanks to a simply graphic interface in style "what you see is what you got". A smart output window allows to plot more than one graph at the same time, and easily compare them. The plotted graphs can be exported as images, in various format. Language supported: italian. Next version probably will include other languages; certainly english will be the first. This is a beta version, so please report any bug if you find something wrong! ...
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Utility.NET
C# Utility Library
Utility.NET is a C# library including common functionality useful across applications. It is a single assembly that can easily be added to any project without the hassle of configuring and building. The library is primarily in use on Windows, but some users have successfully used in on Mono in Linux. The project contains a mix of functions written specifically for this library, and other high quality utility methods made available for free use online. -
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A java software to search neutral loss, precursor ion, product ion and m/z difference in MSMS spectra. The input file can be MGF/MSP file and the output is an Excel 2003 spreadsheet that contains all the search results. Users can write their own query text file based on their study purposes.
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...Mpbenchmark is implemented in several different programming languages, including Ada, C with OpenMp, Java 8 using the Thread class, Java 8 using Thread Pools, Java with Jomp, Jamaica RTSJ with Real-time Threads (compiled) and C#. The input data of mpbenchmark is configurable via InputFile.txt in the IOFiles folder. The output data is be written into IOFiles folder. A paper describing the use of the benchmark to evaluate the parallel processing support of several languages can be found in: Using JetBench to Evaluate the Efficiency of Multiprocessor Support for Parallel Processing, HaiTao Mei and Prof. Andy Wellings, Proceeding of JTRES 2014, 2014. ...
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Algorithms & Data Structures in C++
Algorithms & Data structures in C++
...After the program passes correctly, please initiate Pull Requests, the code is verified and stored in the library, and the new algorithm implementation is published in the README. TAB = 4 space. set ts=4 in vim. Graph output format is Graphviz Dot format. (the output format of the graph is in dot of graphviz.)
