Search Results for "toolbox" - Page 9
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Showing 594 open source projects for "toolbox"
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SimilarityViewer
Identify co-occuring genes in cyanobacteria
...If you use the SimilarityViewer for scientific purposes please cite the according paper. For graphics export the SimilarityViewer uses the outstanding “export_fig” toolbox version 1.99 (https://mathworks.com/matlabcentral/fileexchange/23629-export-fig) courtesy of Oliver Woodford and Yair Altman. [Copyright (c) 2014, Oliver J. Woodford, Yair M. Altman. All rights reserved.] -
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Spock
Another Haskell web framework for rapid development
Kickstart your next Haskell web application within seconds using Spock. Another Haskell web framework for rapid development. Spock is a lightweight Haskell web framework inspired by Ruby's Sinatra. It provides a full toolbox including everything to get a quick start into web programming using Haskell. Spock provides fast route dispatching in a type-safe environment. Built-in support for cookies, secure sessions and CSRF protection. Applications supported by Spock are easily deployed using stack, or Docker. Spock and all ecosystem packages are open sourced on Github. ... -
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AKtoolbox
Matlab Toolbox for coevolution analysis of multiple sequence alignment
AK Toolbox is a Matlab Toolbox for co-evolution analysis for protein Multiple Sequence Alignment (MSA) distributed under Simplified BSD License. The aim of AK toolbox is to provide a set of Matlab functions, which are independent of Matlab Bioinforamtics Toolbox, for coevolution anaylsis for MSA. At present, co-evolution methods available in this package are Statistical Coupling Analysis (SCA), Explicit Likelihood of Subset Covariance (ELSC), Mutual Information (MI), Observed Minus Expected Square method (OMES), McLanhlan Based Substitution Correlation (MCBASC), Direct-coupling analysis (DCA) and logR. ... -
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All future developments will be implemented in the new MATLAB toolbox SciXMiner, please visit https://sourceforge.net/projects/scixminer/ to download the newest version. The former Matlab toolbox Gait-CAD was designed for the visualization and analysis of time series and features with a special focus to data mining problems including classification, regression, and clustering.
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SmartRoot
Semi-automated root image analysis software
...SmartRoot is an operating system independent freeware based on ImageJ and uses cross-platform standards (XML, SQL, Java) for communication with data analysis softwares. To cite us: Guillaume Lobet, Loïc Pagès and Xavier Draye. A Novel Image Analysis Toolbox Enabling Quantitative Analysis of Root System Architecture. 2011 Plant Physiology, Vol. 157 -
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The Temporal Logic Planning (TuLiP) Toolbox is a collection of Python-based code for automatic synthesis of correct-by-construction embedded control software. The source repository, issue tracking, and most developer-oriented tools have been moved to GitHub, https://github.com/tulip-control/tulip-control/
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MT-Toolbox
Software for molecule tagged DNA sequences
...For details and other important information please refer to the MT-Toolbox webpage below. MT-Toolbox is now hosted on github here: https://github.com/islandhopper81/mt-toolbox -
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Plant Metabolite Annotation Toolbox (PlantMAT) is a computational tool combining library search and combinatorial enumeration to facilitate the structural identification of plant specialized metabolites, e.g., saponins and flavonoid glycosides.
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SIPPI
A Matlab toolbox for sampling inverse problems with complex priors
A Matlab toolbox for sampling the solution to inverse problems with complex prior information -
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jPTbox
Java Performance Toolbox
The jPTbox is a library designed as a collection of various small tools that can be used in development of Java applications that have strong performance requirements. Including: - watchdog - state-machine - atomic sequencers - statistics counters - TLV - BNF -
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A Matlab toolbox for geostatistical modelling, prediction and simulation. It contains native matlab algorithms, and interfaces to SGeMS, GSTAT and VISIM.
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TraceX
MatLab App for calculating fitting isotopic exchange profile data
MatLab App for calculating fitting isotopic exchange profile data. Developed for measuring self-diffusivity and effective surface exchange coefficient of ion conducting materials. Requires MatLab image processing toolbox If you use this tool for you research, please cite my PhD thesis: Cooper, S. J. Quantifying the Transport Properties of Solid Oxide Fuel Cell Electrodes. (Imperial College London, 2015). @phdthesis{SJCooper2015, author = {Cooper, S. J.}, number = {November}, publisher = {Imperial College London}, school = {Imperial College London}, title = {{Quantifying the Transport Properties of Solid Oxide Fuel Cell Electrodes}}, year = {2015} } -
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...Its simple API supports over 80 image formats, and is intended to make massive use of other image processing libraries. Animal aims at image analysis and recognition. It is mainly the C basis of the SIP toolbox.
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Open Babel is a chemical toolbox designed to speak the many languages of chemical data. It's an open, collaborative project allowing anyone to search, convert, analyze, or store data from molecular modeling, chemistry, biochemistry, or related areas
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Edges
Structured Edge Detection Toolbox
Structured Edge Detection (Edges) is a MATLAB toolbox implementing the structured forests method for fast and accurate edge detection (up to ~60 fps in many settings). The toolbox also includes the Edge Boxes object proposal method, fast superpixel generation, and utilities for training, evaluation, and integration with vision pipelines. High performance (frames per second performance depending on settings). -
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cphcttoolbox
Cph CT Toolbox is a selection of Computed Tomography tools
Copenhagen Computed Tomography Toolbox is a collection of applications and libraries for flexible and efficient CT reconstruction. The toolbox apps generally take a set of projections (X-ray intensity measurements) and filter and back project them in order to recreate the image or volume that the projections represent. The project includes both mostly informative CPU implementations and highly efficient GPU implementations. -
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colorview2d
Extendible 2D color plotting tool.
Visualize and analyze 3D data files using 2D colorplots. Inspired by spyview. Written in python. -
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The Ogg Video Tools is a toolbox for manipulating and creating Ogg video files. It includes handy command line tools like oggCut, oggCat, oggSlideshow, oggThumb and others.
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UNLocBoX
UNLocBox (Matlab convex optimization toolbox)
The UNLocboX is a matlab convex optimization toolbox part of the UnlocX project. It is composed of the most used algorithms such as forward backward, Douglas-Rachford, admm or ppxa. Moreover a collection of proximal operators is available in order to implement problems very efficiently. -
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FAST Simulations
An Open source Analysis and SImulation Toolbox for Fuel Cells
FAST is an Analysis and Simulation Toolbox (FAST) for Fuel Cells (FC) FAST-FC is the doctorate work of David B. Harvey and was developed with support from the U.S. DOE, Ballard, and Queen's University. Derivative works of FAST-FC include FC-APOLLO which is a forked branch of this project intended to capture the code state at the exit of the funded DOE project. -
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FFmpeg
Tools to process multimedia content such as audio, video, subtitles...
...Provides an abstraction to access capture and playback devices. Implements audio mixing and resampling routines. Implements color conversion and scaling routines. FFmpeg is a command-line toolbox to manipulate, convert and stream multimedia content. ffplay is a minimalistic multimedia player. FFmpeg codebase is mainly LGPL-licensed with optional components licensed under GPL. -
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orbkit (Moved to Github)
A Modular Python Toolbox for Cross-Platform Post-Processing of Quantum
...If you use orbkit in your work, please cite it as follows: Gunter Hermann, Vincent Pohl, Jean Christophe Tremblay, Beate Paulus, Hans-Christian Hege, and Axel Schild, "ORBKIT: A Modular Python Toolbox for Cross-Platform Postprocessing of Quantum Chemical Wavefunction Data", J. Comput. Chem. 2016, DOI: 10.1002/jcc.24358. orbkit's documentation can be found at http://orbkit.github.io/ -
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MT-MT-Toolbox
Metagenomics version of MTToolbox
...The standard version of MT-Toolbox can be applied to any amplicon sequencing project where molecule tags are incorporated. For more information on MT-MT-Toolbox and basic features included in MT-Toolbox please refer to the MT-Toolbox webpage (link below). The basic version can be accessed via SourceForge under the name MTToolbox. -
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goGPS MATLAB is an advanced GNSS observation processing software.
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ASTRA Tomography Toolbox
A high-performance GPU MATLAB toolbox for 2D and 3D tomography
NB: The ASTRA Tomography Toolbox is now hosted at http://www.astra-toolbox.com/ The ASTRA Tomography Toolbox is a MATLAB toolbox based on high-performance GPU primitives for 2D and 3D tomography, developed jointly by the ASTRA-Vision Lab research group at the University of Antwerp and CWI, Amsterdam. It supports 2D parallel and fan beam geometries, and 3D parallel and cone beam.
