Search Results for "sequence scaffold, java" - Page 9

NeoBio is a Java class library of Computational Biology Algorithms. The current version consists mainly of pairwise sequence alignment algorithms such as the classical dynamic programming methods of Needleman-Wunsch and Smith-Waterman.

Java based tool for rapidly creating sequence and class diagrams as gifs from java .jar files. The napkin can also reverse engineer existing java jars and display the structure graphically.

JFetch is an application to download your email through protocols like POP3 and IMAP. The decision of whether to download a mail or not is made through a sequence of filters. The user can easily add customized filters to this sequence.

UMDS is small, strong and expansible project. The model offers a uniform method of conceptual view of the diverse data as a sequence of bits and a uniform method of keeping and processing this sequence on the external storage.

This is a Java-based multiple protein sequence alignment editor. It will be used by protein scientists and annotators to analyse protein sequences, especially in the PIR file format. It will be connected to Clustalw (A multiple sequencea alignment algorit

Calculates the shape of a telescope mirror from a sequence of Foucault test images. Java-based GUI simplifies entering and organizing measurement data. Logging and comparison functions enable quantification of the effects of various figuring strokes.

This is a library for MFi(.mld) format (cellular phone sequence sound for NTT DoCoMo) and SMAF(.mmf) format (for YAMAHA chips). The goal of this project is to be one of SPI javax.sound.midi compliant. May also apply this library on android platform.

AutoCRUD is a Java framework that can generate web application scaffold code from a database schema, similar to RoR. It uses the standard Maven2 web project structure, Spring for MVC, and Velocity for templating. Currently works with MySQL.

Java Chaotic Random Number Generator - Inspired by chaos theory, the intent of this generator is to produce unseeded, unpredictable numbers. The numbers will not follow a predictable sequence and will not rely on a pseudorandom algorithm.

Danaides stores meta-data from biological banks in a graph databases as well as OBO formatted ontologies. It also provides a web query interface to parse ontologies or extract nodes based on ontology requirements. Example: Get all known elements that are in family of Fish (species ontology) AND a RNA (sequence ontology).

Given a String , returns the next logically sequential string defined by a rule. The basic rule is, given a sequence of alphabets, it checks the string and returns a new string with one or more alteration. javadocs and source codes available inside.

PARPs database is a web-based tool whose features include experiment annotation, protein database searching, protein sequence management.Statistical validation, , visualization, and converters from raw MS data open mzXML mzData format

The FilterAny was created to help on tedious tasks when working with text files. It is only necessary to execute a sequence of filters to generate the expected result. In some cases that is trivial, in other cases it can be compared to a simple puzzle. Here are some tasks examples that some people probably had to do manually: • When copying a content from one tool to another one and having that adjusting the position of the text manually. • When receiving one list with any information and...