Search Results for "evolution" - Page 9
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Showing 537 open source projects for "evolution"
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Lep-MAP2
Linkage map construction suite
...If you use Lep-MAP2, please cite Construction of ultra-dense linkage maps with Lep-MAP2: stickleback F2 recombinant crosses as an example P. Rastas, F.C.F. Calboli, B. Guo, T. Shikano & J. Merilä Genome Biology and Evolution, in press. -
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...PoPoolation2 requires next generation sequencing data of pooled genomic DNA (Pool-Seq). It may be used for measuring differentiation between populations, for genome wide association studies and for experimental evolution. Documentation: https://sourceforge.net/p/popoolation2/wiki/Main/
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WireGuard
Historical monolithic WireGuard repository
WireGuard is an archived repository that preserves earlier monolithic development snapshots of the WireGuard project for historical and reference purposes. It reflects a previous stage in WireGuard’s evolution before the codebase was modularized into the modern multi-repository structure used today. The repository is valuable primarily for researchers, maintainers, and security analysts who want to study the protocol’s design history, implementation changes, or legacy behavior. Although not intended for production use, it provides insight into how WireGuard’s minimalist architecture and cryptographic approach matured over time. ... -
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component-watch
Describe and watch component structure of java programs
"Component-Watch" is a tool discovering, showing and assessing the structure of (big) java programs from their classes. It finds what are the components composing a program, analyse what are the relations between those components and compare those the the permitted relations between components. The tool helps to easily define and display UML-like diagrams showing components and their relationship. -
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AKtoolbox
Matlab Toolbox for coevolution analysis of multiple sequence alignment
AK Toolbox is a Matlab Toolbox for co-evolution analysis for protein Multiple Sequence Alignment (MSA) distributed under Simplified BSD License. The aim of AK toolbox is to provide a set of Matlab functions, which are independent of Matlab Bioinforamtics Toolbox, for coevolution anaylsis for MSA. At present, co-evolution methods available in this package are Statistical Coupling Analysis (SCA), Explicit Likelihood of Subset Covariance (ELSC), Mutual Information (MI), Observed Minus Expected Square method (OMES), McLanhlan Based Substitution Correlation (MCBASC), Direct-coupling analysis (DCA) and logR. ... -
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WOW-Auctions-API
Python classes to work with Blizzards API
Auction House API that consumes the official Blizzard's open API Help users to track and monitor AH prices from any World of Warcaft official Server Sends emails when the price of an object is below a treshold predefined by the user. Plot graphs of price evolution -
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TrajectorEE
Trajectories of Loci during Experimental Evolution
Visualizes trajectories of loci during experimental evolution using forward simulations -
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IQM-Plugin-FFI
FFI - fractal fragmentation index
...Fractal dimensions are computed with the popular Box counting method or the Pyramid method. Details can be found in: Andronache etal. Fractal analysis for studying the evolution of forests, Chaos, Solitons & Fractals, 2016, Vol 91, 310-318. Installation instruction: Copy newest jar file to the "Plugins" directory which should be located in the directory of your local IQM main application. IQM: https://sourceforge.net/projects/iqm/ Authors of this plugin: Ion Andronache, University of Bukarest, Romania Daniel Peptenatu, University of Bukarest, Romania Helmut Ahammer, Medical University of Graz, Austria -
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JRipples is an Eclipse plug-in that supports a programmer during software maintenance and evolution in two ways: it does relevant program analysis, and it manages organization of steps that comprise the impact analysis and subsequent change propagation. Further questions? Feel free to contact Yibin Wang (wybever@aliyun.com).
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SimplEvoFramework
Simple Evolution Framework in standard C
This software implements a general framework for experimenting and demonstration of evolutionary algorithms. The software is implemented in standard C and tries to be as general as possible. The user can implement his/her own fitness function and genotype representation. Since standard C is used the implementation of new fitness functions and gene types require a bit of archaic C programming. -
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osoe
One Student One ERP Project
...We believe that a significant gap exists between how management science is tought and how things are really going on within each company. By using open source ERP5 as a support for management lectures, we hope to trigger an evolution in the way management is tought, to captivate students and prepare them even better for the harsh competition of globalized economy. -
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PANTHER project: software for modeling of protein sequence and function evolution, and tools for applying these data to the analysis of genome data, expression data and coding SNPs. Details available at http://www.pantherdb.org.
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SmarTree
Smart Swing JTree evolution
An extension of the class javax.swing.JTree with a lot of improvements and utilities. -
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cafe
CAFE: Computational Analysis of gene Family Evolution
CAFE: Computational Analysis of gene Family Evolution -
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Opt4J
Modular Java framework for meta-heuristic optimization
Opt4J is an open source Java-based framework for evolutionary computation. It contains a set of (multi-objective) optimization algorithms such as evolutionary algorithms (including SPEA2 and NSGA2), differential evolution, particle swarm optimization, and simulated annealing. The benchmarks that are included comprise ZDT, DTLZ, WFG, and the knapsack problem. The goal of Opt4J is to simplify the evolutionary optimization of user-defined problems as well as the implementation of arbitrary meta-heuristic optimization algorithms. For this purpose, Opt4J relies on a module-based implementation and offers a graphical user interface for the configuration as well as a visualization of the optimization process. -
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BayesRate
Bayesian estimation of diversification rates
...BMC Evolutionary Biology, 11, 311 Silvestro D., Zizka G. & Schulte K. (2014) Disentangling the effects of key innovations on the diversification of Bromelioideae (Bromeliaceae). Evolution, 68, 163-175. -
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r8s
Divergence time estimation on phylogenies
This package implements several methods to infer divergence times on a molecular phylogeny, using penalized likelihood, maximum likelihood and nonparametric rate smoothing methods. It also implements miscellaneous tree and character evolution models and tests. -
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PGAP
PGAP is a pipeline for pan-genome analysis.
...It could perform five analytic functions with only one command, including cluster analysis of functional genes, pan-genome profile analysis, genetic variation analysis of functional genes, species evolution analysis and function enrichment analysis of gene clusters. -
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UBotSim
Robot Simulator for UBot Self-reconfigurable Robot
A simulation and evolution platform for UBot self-reconfigurable robot. More functions will come as soon as possible. Used libraries: MYGui3.2.0; OGRE1.8.0; Physx3.2; MTparser; GAlib;and other EAs including PSO, GEP etc. Precompiled SDK download site：http://dl.vmall.com/c07d135mza Operation System: Windows (Win 7 is prefered). Delveloping tool (IDE):Visual Studio 2010. -
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Skill Map
A visualization of programmer skill maps
...Visual representation of programming and IT skill domains. Encourages community collaboration and feedback via GitHub Issues. Open to content updates, additions, and evolution as a living reference. -
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LEA
Database Questions & QCM Generation
LEA is a PHP/MySQL web-based platform allowing to create questions using multiple choice answer, with one or multiple answer(s). It's an evolution of eTests ( https://sourceforge.net/projects/etests ). The branch of LEA is developed from sept 2014 to march 2015 before take his own way. The main language of this projet is French, but a large part of this project is comptatible in English -
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Forward Simulation
A Wright-Fisher forward population genetics simulation.
The forward simulation code is a tool to model evolution of a population under the Wright-Fisher model. The code incorporates population expansion, bottleneck, speciation and migration. Several selection and fitness mechanisms are available: selective sweeps, foreground selection in one region with a distinct background selection in neighboring regions, epistasis, and truncation selection. -
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The Evolution Linux Project
Current Project: Makeiso For Arch Linux
The Evolution Linux Project has shifted focus towards a new effort called Makeiso. Makeiso is currently in the alpha development stage. The script and iso are made available for testing and feedback. Makeiso will make it easy to duplicate your perfectly customized Arch Linux installation. The Makeiso script will create a live ISO that will include an all new net-based, guided manual CLI installer. -
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...Projet réalisé dans le cadre de l’UV (Unité de Valeur) GL02 à l’Université Technologique de Troyes. La partie spécification a été pris en charge par l’équipe Ulysse. L’implémentation a été elle fait par une autre équipe. La partie Maintenance et Evolution qui consiste à effectuer différents tests pour vérifier si la librairie dispose bien des fonctionnalités attendues et spécifiées a été fait par l’équipe Ulysse. Licence : CeCILL-C Pour plus d'informations les versions anglaise et française sont disponible dans le dossier LICENSE
