Search Results for "k-meleon" - Page 8
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Secure remote access solution to your private network, in the cloud or on-prem.OpenVPN is here to bring simple, flexible, and cost-effective secure remote access to companies of all sizes, regardless of where their resources are located.
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LaNet-vi provides images of large scale networks on a two-dimensional layout. The algorithm is based on the k-core and k-dense (m-core) decomposition. For more details see http://lanet-vi.fi.uba.ar.
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Scaffold_Builder
Combining de novo and reference-guided assembly with Scaffold_builder
Scaffold_builder is software to order contigs generated by draft sequencing along a reference sequence. Gaps are filled with N's and small overlaps are aligned with Needleman–Wunsch algorithm and the consensus created with IUPAC codes. Scaffold_builder can help in the assembly and annotation of genomes by revealing what is missing and allowing targeted sequencing to close those gaps. (c) Silva GG, Dutilh BE, Matthews TD, Elkins K, Schmieder R, Dinsdale EA, Edwards RA. Please... -
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The"Amip" GUI is intended to provide code examples of the methods proposed in: "Unsupervised image segmentation for microarray spots with irregular contours and inner holes" authors: Bogdan Belean, Monica Borda, Jörg Ackermann, Ina Koch and Ovidiu Balacescu Journal: BMC Bioinformatics, 2015, 16:412 https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-015-0842-3 PDE were used for grid alignment, whereas autocorrelation driven PDE and k-means clustering were used...
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koel
A personal music streaming server that works
Koel (also styled as koel, with a lowercase k) is a simple web-based personal audio streaming service written in Vue at the client side and Laravel on server side. Targeting web developers, Koel embraces some of the more modern web technologies – flexbox, audio and drag-and-drop API to name a few – to do its job. -
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COPEread
Connecting Overlapped Pair-End Reads
COPE (Connecting Overlapped Pair-End reads) is a method to align and connect the illumina sequenced Pair-End reads of which the insert size is smaller than the sum of the two read length.The connected reads can be used in genome assembly, resequencing and transcriptome research. The full citation: COPE: An accurate k-mer based pair-end reads connection tool to facilitate genome assembly Binghang Liu; Jianying Yuan; Siu-Ming Yiu; Zhenyu Li; Yinlong Xie; Yanxiang Chen; Yujian Shi; Hao Zhang... -
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This site contains four packages of Mass and mass-based density estimation. 1. The first package is about the basic mass estimation (including one-dimensional mass estimation and Half-Space Tree based multi-dimensional mass estimation). This packages contains the necessary codes to run on MATLAB. 2. The second package includes source and object files of DEMass-DBSCAN to be used with the WEKA system. 3. The third package DEMassBayes includes the source and object files of a Bayesian...
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ChIP-RNA-seqPRO
ChIP-RNA-sequencing-processing (ChIP-RNA-seqPRO)
ChIP-RNA-seqPRO: A strategy for identifying regions of epigenetic deregulation associated with aberrant transcript splicing and RNA-editing sites. Runnable python scripts packaged together with customized annotation libraries, demo data input and README guide. 9/26 : v1.1 Updated MAIN_IV to debug error thrown by python pandas no longer supporting 'subset'. This code will no longer be actively maintained/updated here. A cloud-based resource for comparative analysis of epigenetic,... -
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Virastyar
Virastyar is an spell checker for low-resource languages
Virastyar is a free and open-source (FOSS) spell checker. It stands upon the shoulders of many free/libre/open-source (FLOSS) libraries developed for processing low-resource languages, especially Persian and RTL languages Publications: Kashefi, O., Nasri, M., & Kanani, K. (2010). Towards Automatic Persian Spell Checking. SCICT. Kashefi, O., Sharifi, M., & Minaie, B. (2013). A novel string distance metric for ranking Persian respelling suggestions. Natural Language Engineering, 19(2... -
Red Hat Enterprise Linux on Microsoft AzureRed Hat Enterprise Linux (RHEL) on Microsoft Azure provides a secure, reliable, and flexible foundation for your cloud infrastructure. Red Hat Enterprise Linux on Microsoft Azure is ideal for enterprises seeking to enhance their cloud environment with seamless integration, consistent performance, and comprehensive support.
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libsombrero
Astronomical object/structure detection from 1D and 2D data sets.
Sombrero is a fast wavelet image processing and object detection C library for astronomical images. Sombrero is named after the "Mexican Hat" shape of the wavelet masks used in image convolution and is released under the GNU LGPL library. -
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Subtractive Assembly
An approach for comparative metagenomics by assembling the differences
Subtractive Assembly is a de novo approach for comparative metagenomics by assembling the differential portion of reads directly. Given two metagenomic datasets A and B, subtractive assembly approach first identifies reads that are likely sampled from abundant or unique genomes in A (or B vice versa), using Bloom-filter based k-mer counting. And one can assemble only these reads separately using metagenomic assemblers such as IDBA-UD. We further developed concurrent subtractive assembly... -
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Trowel - Sequencing Error Corrector
Error Correction Module for Illumina Sequencing Reads
Trowel is an error correction module for Illumina sequencing reads, which is based on the k-mer spectrum approach. This tool is the first tool that uses a quality threshold instead of a coverage cutoff in order to extract trusted k-mers. This tool guarantees high accuracy and speed. This tool has been developed since 21. Jan. 2013 by Euncheon Lim in Prof. Dr. Detlef Weigel's Lab in Max-Planck Institute for Developmental Biology. First of all, you have to install the exact version of boost... -
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SummaRE
Konversi dini nilai rapor untuk tingkat SMA pengguna K-13.
SummaRE adalah sebuah aplikasi dini yang berfungsi untuk mengonversi nilai kecil (skala 1 - 4) menjadi nilai besar (1 - 100), serta mengukur kenaikan - kenaikan yang terjadi tiap semesternya untuk tiap mata pelajaran. Tersedia untuk 3 (tiga) peminatan, Matematika dan Ilmu - Ilmu Alam (MIA), Ilmu - Ilmu Sosial (IIS), dan Ilmu - Ilmu Bahasa (IIB). -
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K-Level 2.0 [revised]
An application of leveling network adjustment using Matlab
This is an application of leveling network adjustment based on Matlab. The method used in this application is least square adjustment. User can enter the leveling data directly or by reading a text file. -
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GenNet
A Tool for Qualitative and Quantitative Modeling of Gene Regulatory Ne
A Tool for Qualitative and Quantitative Modeling of Gene Regulatory Networks. GenNet is a Java based tool called that facilitate the model checking user by providing a unique GUI layout for both qualitative and quantitative modeling of GRNs. GenNet also assists the modeling users by providing some extra features i.e. CTL editor, parameters filtering and input/output files management. Download pre-installed GenNet Virtual Box Image here... -
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AmiPUP
Puppy Linux derivative
AmiPUP is a very small, lightweight “live boot” Linux system built on the Puppy Linux distro. AmiPUP works with almost any x86 computer that can boot from CD or USB (USB booting doesn't work with Macs). At boot, AmiPUP loads EVERYTHING into ram, so all applications load blazing fast! Changes can be saved to the USB or multi-session CD boot device (or not at all). The host system is never touched! -
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Cross-Language Computational Linguistics
cross-languages resources
... under Creative Commons Attribution-ShareAlike 3.0 License. https://en.wikipedia.org/wiki/Wikipedia:About To cite the corpora: M. Saad, D. Langlois, and K. Smaïli. Extracting Comparable Articles from Wikipedia and Measuring their Comparabilities. Procedia - Social and Behavioral Sciences, 95(0):40 – 47, 2013. ISSN 1877-0428. -
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FractalAnalyzer
A GUI application for multifractal seismicity analysis of earthquakes.
Reference: Roy, P. N. S. and Gupta, D. K., 2015, FractalAnalyzer: A MATLAB Application for Multifractal Seismicity Analysis, Seismological Research Letters, 86 (5). -
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SD_DSS
Solid dispersion decision support system
Application was created as a part of project K/DSC/001969 subsidy for young researchers from Polish Ministry of Higher Education. SD_DSS is devoted to predict dissolution profile of a solid dispersion system. It's predictions are based on randomForest model. Authors: Jakub Szlęk Aleksander Mendyk Miłosz Polak -
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ADSBET2
ADSBET2: AUTOMATED DETERMINATION OF SALT BRIDGE ENERGY TERMS, ver-2
ADSBET2: AUTOMATED DETERMINATION OF SALT BRIDGE ENERGY TERMS, version 2.0 Author:c)--Arnab Nayek, Parth Sarthi Sen Gupta, Shyamashree Banerjee,Vishma Pratap Sur, Pratay Seth, Sunit Das, Rifat Nawaz Ul Islam and Amal K bandyopadhyay* Department of Biotechnology,The University of Burdwan, India -
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Adaptive Gaussian Filtering
Machine learning with Gaussian kernels.
Libagf is a machine learning library that includes adaptive kernel density estimators using Gaussian kernels and k-nearest neighbours. Operations include statistical classification, interpolation/non-linear regression and pdf estimation. For statistical classification there is a borders training feature for creating fast and general pre-trained models that nonetheless return the conditional probabilities. Libagf also includes clustering algorithms as well as comparison and validation... -
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GTkNN
GPU-based Textual kNN (GT-kNN)
The following code is a parallel kNN implementation that uses GPUs for the high dimensional data in text classification. You can use it to classify documents using kNN or to generate meta-features based on the distances between a query document and its k nearest neigbors -
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PHYSICO2
PHYSICO2: Software for Computation of Properties of Protein Sequences
Program: PHYSICO2: An UNIX based Standalone Procedure for Computation of Physicochemical, Window-dependent and Substitution Based Evolutionary Properties of Protein Sequences along with Automated Block Preparation Tools, Version 2 . Version:--v2.0 - improved version of PHYSICO: Gupta et al Bioinformation, 10(2), 105-107, 2014 Author:c)--Shyamashree Banerjee1+, Parth Sarthi Sen Gupta1+, Arnab Nayek1+, Sunit Das1, Vishma Pratap Sur1, Pratyay Seth1, Rifat Nawaz Ul Islam1, & Amal K... -
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ADSBET
ADSBET - Auomated Determination of Salt-bridge Energy Terms
Program: ADSBET--Automated Determination of Salt-bridge Energy Terms Author:c)--Arnab Nayek, Parth Sarthi Sen Gupta, Shyamashree Banerjee, Sunit Das, Vishma Pratap Sur, Pratay Seth, Rifat Nawaz Ul Islam and Amal K bandyopadhyay* Department of Biotechnology,The University of Burdwan, India -
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phpBugTracker
Bug tracking system
PROJECT MOVED TO: https://github.com/a-v-k/phpBugTracker . This planned as PHP replacement for bugzilla, focusing on separating code layers by using templates and a database abstraction layer, making it more maintainable. phpBugTracker is lightweight and easy to install, operate and administer. Most text can be customized for your application.