Showing 537 open source projects for "evolution"

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  • 1
    Evolution Strategies Starter

    Evolution Strategies Starter

    Code for the paper "Evolution Strategies.."

    evolution-strategies-starter is an archived OpenAI research project that provides a distributed implementation of the algorithm described in the paper “Evolution Strategies as a Scalable Alternative to Reinforcement Learning” by Tim Salimans, Jonathan Ho, Xi Chen, and Ilya Sutskever. The repository demonstrates how to scale Evolution Strategies (ES) for reinforcement learning tasks using a master-worker architecture, where the master node broadcasts parameters to multiple workers, and the workers return performance results after evaluation. ...
    Downloads: 1 This Week
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  • 2

    OpenDino

    Open Source Java platform for Optimization, DoE, and Learning.

    ...It provides a graphical user interface (GUI) and a platform which simplifies integration of new algorithms as "Modules". Implemented Modules Evolutionary Algorithms: - CMA-ES - (1+1)-ES - Differential Evolution Deterministic optimization algorithm: - SIMPLEX Learning: - a simple Artificial Neural Net Optimization problems: - test functions - interface for executing other programs (solvers) - parallel execution of problems - distributed execution of problems via socket connection between computers Others: - data storage - data analyser and viewer
    Downloads: 0 This Week
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  • 3
    DetectAndTrack

    DetectAndTrack

    The implementation of an algorithm presented in the CVPR18 paper

    ...Although the repo has been archived and is now read-only, its issue tracker and artifacts remain useful for understanding implementation details and experimental settings. The project sits alongside other Facebook Research vision efforts, offering historical context for the evolution of video pose and tracking techniques. Researchers can still study the algorithms, adapt the pipeline, or port ideas into modern frameworks.
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  • 4

    packeis

    Check for selection of RNA secondary structure

    PACKEIS is a software that allows us to assess whether or not a coding sequence represents an extreme solution in terms of backfolding, considering the alternative coding sequences that could have been realized by evolution in order to encode the given peptide sequence based on usage of synonymous codons.
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  • 5
    Killer Keks Train

    Killer Keks Train

    Herzlich Willkommen bei den Killer Keksen

    Herzlich Willkommen bei den Killer Keksen wir sind eine Gamming Community die seit 2007 bestand hat. Seit 2015 sind wir im Bereich Modding unterwegs und haben 2017 dieses Modpack auf den Beinen gestellt es beinhaltet so ziehmlich alle Aspekte im Minecraft. Warum noch 1.7.10 ?? Nun die MC Version 1.7.10 läuft im forge noch am Stabilsten und hat noch mehr Mods als eine 1.12. oder höher und eine 1.7.10 benötigt halb soviel Leistung als eine Neuere Version. Ihr findet unser Modpack unter...
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  • 6
    The in-house Perl scripts for data filter, variants annotation and population genetic analyses (π, θw, HE and FST) of the paper "Origin and evolution of qingke barley in Tibet".
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  • 7

    PTM-X

    a solfware for predicting posttranslational modification cross-talk

    ...The prediction model is a naive Bayse classifier that integrats five features: protein sequence distance, tertiary structural distance, co-location in a disordered region, residue co-evolution, and modification co-evolution. An online tool is also available at http://bioinfo.bjmu.edu.cn/ptm-x/.
    Downloads: 1 This Week
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  • 8
    Jenetics: Java Genetic Algorithm Library
    ...Jenetics allows you to minimize or maximize the given fitness function without tweaking it. In contrast to other GA implementations, the library uses the concept of an evolution stream (EvolutionStream) for executing the evolution steps. Since the EvolutionStream implements the Java Stream interface, it works smoothly with the rest of the Java Stream API. Other repositories: - https://github.com/jenetics/jenetics Maven: - https://mvnrepository.com/artifact/io.jenetics
    Downloads: 4 This Week
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  • 9
    Git Time Machine

    Git Time Machine

    Atom package that allows you to travel back in commit history

    ...Instead of just opening a commit log or diff, git-time-machine gives an interactive, incremental experience where you can slide through versions and see content changes in place. This is especially helpful when diagnosing when bugs were introduced, exploring regression contexts, or reviewing code evolution visually. For projects with many commits, it accelerates historical exploration, and it is commonly integrated into editors so developers can use it in their working environment.
    Downloads: 0 This Week
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  • 10
    MANTIS R Package

    MANTIS R Package

    Multi-locus ANTIgenic Simulator R-package for multi-strain pathogens

    ...MANTIS is developed and maintained by the Evolutionary Ecology of Infectious Disease (EEID) research group at the Department of Zoology, University of Oxford, UK. For theoretical background please refer to 'MANTIS: an R package that simulates multilocus models of pathogen evolution' (https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-015-0598-9 OPEN ACCESS) At the moment, MANTIS is not available on CRAN. To build a source package of MANTIS, use the script buildPackage.R To install MANTIS use 'install.packages(file.tar.gz,type="src",repo=NULL)' To test use test_V3.3_code.R Contact the main author of the publication above for further details. ...
    Downloads: 1 This Week
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  • 11
    D-Tailor

    D-Tailor

    D-Tailor: automated analysis and design of DNA sequences

    Recent advances in DNA cloning and synthesis technologies afford high throughput implementation of designed sequences into living cells. However, our ability to design sequences to interrogate multifactorial biological processes and further engineer biological functions is lagging behind. DNA-Tailor (D-Tailor) is a fully extendable software framework for biological sequence analysis and multi-objective sequence design. D-Tailor permits the seamless integration of an arbitrary number of...
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  • 12
    archkur
    Archkur is the revised version of the EvoLution Linux project. Various errors have been fixed. Removal of multiple language support is only available in English and Turkish. https://github.com/EvoLutionLinux/archiso Archkur allows you to install various desktop environments with pure Arch Linux current packages. For example Minimal gnome, Gnome, Minimal Kde, Kde , Cinnamon, Lxde, Mate, Openbox + Evo (EvoBox) Enlightenment.
    Downloads: 0 This Week
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  • 13
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  • 14

    popt4jlib

    Parallel Optimization Library for Java

    popt4jlib is an open-source parallel optimization library for the Java programming language supporting both shared memory and distributed message passing models. Implements a number of meta-heuristic algorithms for Non-Linear Programming, including Genetic Algorithms, Differential Evolution, Evolutionary Algorithms, Simulated Annealing, Particle Swarm Optimization, Firefly Algorithm, Monte-Carlo Search, Local Search algorithms, Gradient-Descent-based algorithms, as well as some well-known network flow and other graph algorithms. A fast parallel implementation of the network simplex method, and some full-fledged parallel/distributed MIP solvers will be added in the next version. ...
    Downloads: 1 This Week
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  • 15
    Graphcool Framework

    Graphcool Framework

    Graphcool is an open-source backend development framework

    ...Graphcool separates the business logic from stateful storage components, allowing the stateful parts (database, subscription engine) to scale independently and giving flexibility in how you compose your system. Users could deploy Graphcool either locally (e.g. via Docker) or on a managed cloud offering. The framework also provided features like schema evolution, migrations, data loaders for performance, and built-in tooling to manage endpoints and deployments.
    Downloads: 0 This Week
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  • 16
    blog_os

    blog_os

    Writing an OS in Rust

    “blog_os” contains the source code for Philipp Oppermann’s renowned "Writing an OS in Rust" blog series. Each tutorial is paired with a Git branch demonstrating the OS's incremental evolution, covering components like kernel setup, interrupts, paging, heap allocation, and async multitasking. The current version of the blog is already the second edition. The first edition is outdated and no longer maintained, but might still be useful. You can find the branch for each post by following the (source code) link in the post list below. ...
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  • 17
    Elle Microstructural Modelling
    The goal of the Elle Project is to provide a general purpose modelling environment for the simulation of rock microstructure evolution. The code is based around a unified description of 2D microstructure.
    Downloads: 0 This Week
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  • 18

    SW-DLP: Developing ontoLogy by Profiling

    a tool for easing the ontologies editing and evolution (Semantic Web)

    The DLP tool was ideated and developed by: Dr. Luca Mazzola, MsC. Patrick Kapahnke, and PD Dr. Matthias Klusch at the German Research Center for Artificial Intelligence DFKI GmbH (http://www.dfki.de ) in Saarbrücken, Germany. Copyright: DFKI, 2017, licence GLP see https://www.gnu.org/licenses/gpl-3.0.en.html For bug reports, technical problems and feature requests please contact: Luca Mazzola: luca.mazzola@dfki.de or mazzola.luca@gmail.com Patrick Kapahnke: patrick.kapahnke@dfki.de
    Downloads: 0 This Week
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  • 19
    Flummox

    Flummox

    Minimal, isomorphic Flux

    ...Flummox also promotes a more structured and scalable approach to managing application state compared to earlier Flux implementations. By focusing on modularity and composability, it enables developers to build maintainable and flexible architectures. Overall, flummox represents an evolution of the Flux pattern toward better developer ergonomics and testability.
    Downloads: 0 This Week
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  • 20
    MimicrEE (Mimicing Experimental Evolution) is a tool for forward simulations of entire genomes. It basically allowes to simulate adaptation from standing genetic variation, thus no 'de novo' mutations are supported. It has been tested with 8,000 individulas having 2,000,000 million SNPs. Documentation: https://sourceforge.net/p/mimicree/wiki/Main/
    Downloads: 0 This Week
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  • 21
    EQGRP

    EQGRP

    Decrypted content of eqgrp-auction-file.tar.xz

    ...The release offers researchers insight into real-world offensive techniques, though many of the specific exploits are now outdated or patched. EQGRP remains a controversial but important resource for studying the evolution of nation-state-level cyber operations.
    Downloads: 7 This Week
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  • 22

    Mirrors

    arbitrary physical system simulator using artificial evolution

    "Mirrors" is a simulation of an arbitrary physical system, where the goal is achieved using artificial evolution. The simulation can be used to demonstrate how random mutations manage to create an overall progress towards perfection. Running this requires java 8 installed and on path. https://github.com/JoonasVali/mirrors
    Downloads: 0 This Week
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  • 23

    GenCodeGenerator

    C++ class to generate biologically plausible genetic codes

    The "GeneticCode" C++ class is designed to generate versions of the genetic code subject to the requirements of the three major models of the genetic code origin and evolution (about these models see, e.g., Koonin & Novozhilov, 2009, IUBMB Life). This class was written specifically to perform statistical test for the paper Makukov & shCherbak (2017), but it might be used for a wider class of studies related to the genetic code. By default, the class "GeneticCode" generates alternative genetic codes, with the reqirement of block structure, and, optionally, with the assumption of stereochemical or biosynthetic models (to impose the assumption of the adaptive model, simply filter the codes using the error_cost() function). ...
    Downloads: 0 This Week
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  • 24

    Coastline Evolution Model

    Modified version of the Coastline Evolution Model (CEM)

    The Coastline Evolution Model (CEM), originally developed by Ashton et al. (2001), Ashton and Murray (2006) and Valvo et al. (2006), is a reduced complexity, one-line sediment transport model that simulates the evolution of coastlines via wave-driven alongshore sediment transport. The original CEM has no Graphical User Interface (GUI) and does not provide graphical visualisations during model runs.
    Downloads: 0 This Week
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  • 25
    Evolutionary relationship of species provides a great deal of information about their biochemical machinery. So many researchers focus on the research of constructing the phylogenetic tree. A phylogenetic tree is a representation of evolution, tree normally describe the evolution of the species where the sequence are found.A method called the neighbor-joining method is proposed for constructing phylogenetic trees from evolutionary distance data. The principle of this method is to find pairs of operational taxonomic units (OTUs [= neighbors]) that minimize the total branch length at each stage of clustering of OTUs starting with a star like tree. ...
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